Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03941 ATGCATGAGAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTGTGATTCTAGCTGGCATCTTGGCACAAACTGGACTCAATGCATTGATCATTCCCCCTTTCAAGTACCTTCACAAATACTACCTCATGTTTCTGACCCTGCCTCTCTTCAATTTGGTGAGTTCCACTCATGGCCTTTACCCATTGAAGGGGCTGCAGAAGATAGAGCAGCAAGTGCTTCCAAAAGTCACAGTCAAGCTGAGAAAAGGCGCAGAGATAGGATCAATGCACAGCTTGCAACTCTAAGAAAACTGATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCATGTCAAAGATCTAAAACGAAAAGCAATGGATGTTAGCAAAGCCTTCACGGTTCCAACTGAAATTGATGAAGTATCAATTGACTATGACCATGTTCAAGATGAAGGCTGTACTAAAGTGAACAAATTCAAGGACAAGATCATCATCAAAGCTTCTGTTTGCTGTGAAGATCGACCAGAATTGTTCTCTGAACTCATCCAAGTCCTTAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTAGGTGGCAGGATCAAAAGCACATTGGTGCTTTGTTCTAAGGATAGTGAAGAGGGTGTTTGCCTTAGCACTCTCAAACAGTCCCTTAAATCAGCTGTGACCAAAATAGCTTCCTCATCCATGGCACCTAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTTTTCTTGCCTTCTCATTTCGTACAATAA 795 0.4226 MHERNFRMVSIVTMENYCDSSWHLGTNWTQCIDHSPFQVPSQILPHVSDPASLQFGEFHSWPLPIEGAAEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSKAFTVPTEIDEVSIDYDHVQDEGCTKVNKFKDKIIIKASVCCEDRPELFSELIQVLKGLRLTAVKADIASVGGRIKSTLVLCSKDSEEGVCLSTLKQSLKSAVTKIASSSMAPNCPTRSKRQRFFLPSHFVQ* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03941 264 Pfam Helix-loop-helix DNA-binding domain 78 124 IPR011598 GO:0046983
Rops11g03941 264 CDD bHLH_AtAIG1_like 70 149 - -
Rops11g03941 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Rops11g03941 264 MobiDBLite consensus disorder prediction 69 89 - -
Rops11g03941 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 127 IPR036638 GO:0046983
Rops11g03941 264 SMART finulus 81 130 IPR011598 GO:0046983
Rops11g03941 264 PANTHER TRANSCRIPTION FACTOR BHLH30 68 259 IPR045847 GO:0003700|GO:0006355
Rops11g03941 264 CDD ACT_UUR-ACR-like 171 206 - -
Rops11g03941 264 Gene3D - 69 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03941 Rops-Chr11 73567906 73569713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03941 14 262 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.966 4.89e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g03941 HLH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03941 - - gmx:100799687 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03941 11 73567906 73569713 Rops11g03941 11 73567906 73569713 ECH
Rops11g03941 11 73567906 73569713 Rops9g00822 9 12707732 12709074 PCT