Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03940 ATGTCGAGCCCAGATTCTCGTTCATTGAATTGGCACTATACAGAAATAGATGACAAAGATCTCGAGATCCGAGGAAGAACACTGTTCTTCATCATCGTACTTTTTTCCATTATTCTTCTCATCACTGTTCTCTTCATATATACACGCTGGGTCTGTCGCTACCATAGCCACTTACCCACCACCACGTTCTCCTCCGCCGTCCACGCGCCACCGCAGTTACAAGGACTGGACCCAGCTTCGATCAAGAAACTGCCCATTATCTTGCACCAGGCGCCGTCGGAGCCTGACTGCGGCGCGTGGGAGGAAACGGAGTGTTGTATCTGTTTGGGTGAGTTCATAGACGGTGAGAAACTGAAGGTTTTGCCAGGGTGTGACCACCGTTTCCATTGTGAGTGTGTTGATAAGTGGCTCACTCATCACTCTAGTTGCCCTCTTTGCAGAGCTTCTCTCAAGGTTGAATCTTCATTTCCAAAGATTTTGATTCAGGAACCACCCATTAGAATTGACATCCAGTTCTAG 519 0.4798 MSSPDSRSLNWHYTEIDDKDLEIRGRTLFFIIVLFSIILLITVLFIYTRWVCRYHSHLPTTTFSSAVHAPPQLQGLDPASIKKLPIILHQAPSEPDCGAWEETECCICLGEFIDGEKLKVLPGCDHRFHCECVDKWLTHHSSCPLCRASLKVESSFPKILIQEPPIRIDIQF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03940 172 SUPERFAMILY RING/U-box 99 153 - -
Rops11g03940 172 SMART ring_2 105 146 IPR001841 -
Rops11g03940 172 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 154 - -
Rops11g03940 172 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Rops11g03940 172 Pfam Ring finger domain 104 147 IPR001841 -
Rops11g03940 172 FunFam RING-H2 finger protein ATL66 68 152 - -
Rops11g03940 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03940 Rops-Chr11 73557689 73558576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03940 9 155 C3H Transcription Factor Family AT3G11110 43.421 1.08e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03940 - - gmx:100803278 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03940 11 73557689 73558576 Rops9g00819 9 12666885 12667427 PCT