Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03938 ATGCAAGTGAAAGCCATGAAGGGTTATGAGCCCCGTTCTAGCTCTTCTTGTGCAGCTTGCAAGTTATTGAAAAGAAGATGCATACCCAATTGTATTTTTGCACCTTACTTTCGTTCTGATGAGTGTAAGAAATTTGCCAAGGTGCACAAGGTATTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTGCCTGAAGAGCAAAGGGAAGACACAGTGAATTCTCTTGCATATGAAGCTGAGGCAAGGCTGAGAGACCCAGTTTATGGATGCATTGGAGCCATATCACTGTTGCAAAGGAAGATGGTGGAGCTTCAACATGACTTGGCCATTGCTAAGGATCGTCTTGCTCGTTGTCATGCTGCTGCTGTTGCTTCTACTACCACCACTCCTCCTTCTGCTGATATCTTGCATGCTAATGTTAGCTTGCCACCTTTCCCTGACTTTTCAACTTGCAGTGATTTCAATGATATCTTCTGCCACAGCTCTTCTTCATCTCAATTATTCAGCCGACATGACACGGTGGATGATTTCAACCAAATCCCATATATATTATAA 558 0.4355 MQVKAMKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAISLLQRKMVELQHDLAIAKDRLARCHAAAVASTTTTPPSADILHANVSLPPFPDFSTCSDFNDIFCHSSSSSQLFSRHDTVDDFNQIPYIL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03938 185 Coils Coil 95 115 - -
Rops11g03938 185 ProSiteProfiles LOB domain profile. 15 116 IPR004883 -
Rops11g03938 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 133 - -
Rops11g03938 185 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03938 Rops-Chr11 73501525 73502293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03938 6 149 AS2 family AT3G11090 66.667 1.34e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops11g03938 LOB 9.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03938 - - gmx:100305534 313.153