Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03937 ATGAATGATTCCACTATGGTGATCCCTTCAGACTTTTTACCAACTAGTTCTTTGCTAGATTCGTTGATTAACTTATGCAATGAAGTTTGCTCAAGGGAAAAGTTTCCATTTGTACATGCAAGGAATGTTGCATCCACGATAAGGAGGATCAAGCTTCTTTCTTCTTTGTTTGAGGAGATTCAAATATCAGATAATCCACATCCTCCTTCTTCGATCCTGTGTTTCACTGAGTTCTTTTCTTTGATTACAAAAGTTAAGCTTTTGATCCAAGAGTGCAAGGATGGAAGCTACCTTTGGGGTCTCATACAGTTAGAGTTCATCTCCAACCAATTTTATGCGCTGGCAAAAGAGATGGGAAGGGTTCTTGATACCCTGCCTCTGAGTTTGCTTAACATAACAACAGATATAAGGGAACAACTAGAGCTTCTGCATAAACAGACAAAGAGGGTTGAGTTGTTCATTGATTCTAGAGATCTTCAAAGAAGAGATCAGCTCCTACAAGTAATTGCCAACAACAGTTTACCAAACAAGAAGAGCAAGGACTTTGTTGATTTGGGGAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAAAAATCCATCAGATTATGATAGAGAAATATCAAAGCTAGAGGCCGAAGCTCAGAATCAAGCAGGCACAGGTGGACTAATGGTGGTCTCCAATATAAACAATCTCTTATCTTTGGTTTCACATTCCAAATCCATGTTATTTAGAGATGGAGAAAACAAAAGATATGAAGGAAACTGCATGCCACTATCTGAATTCCTATCTATTAATATCCATCATGGTTCACCATCTTCTCAGTCCATGCCACTTAATATTCCTGACGAATTTCTTTGCTCAATTTCACTTCAACTAATGAGAGACCCTGTGATTGTATCATCTGGGCACACCTATGATCGAAATTCCATTGCACAATGGATAAACTCGGGGCATTATACTTGTCCAAAAAGTGGGCAAAGGTTAGCTCACAAAGCTCTAATACCCAACTATGCATTGAAGAGTCTTGTCCAGCAATGGTGCTATGAAAACAAAGTCCCAGTGAATGATCCTACTTATTCACTTTCAGATGGAAAAAGCAGTAAGAAAAACTCGAATGAGAATGCCGTTGATCATATTTCTGGAAACAAAGGATCTAAAGATGCTGTCAAAATGACAGCAGAATTTCTGGTTGGGAAATTGGCAACTGGCTCAGTTGACGTCCAAAGGAAAGCCGCATATGAACTTCGGTTACTTGCAAAATCTGGCATGGATAATCGAAGAATTATAGCTGAGGCTGGGGCTATTCCATTTCTAGTGACACTATTAGGTTCCCATGATCCAAGAATCCAGGAACATGCAGTGACAGCCTTGTTTAACCTCTCTATTTTTGACAACAACAAGATTTTGACAATGGCAGCTGGAGCAGTAGAAAATATAATAGAAGTACTTGAATCAGGGAAGACCATGGAGGCAAGAGAAAATGCAGCAGCAGCAATCTTCAGCCTGTCTATGGTAGATGATAATAAAGTAATAATTGGAGCTCATGCAAGGGCCATACCTGCCTTAGTTGGACTCCTTAAAGAAGGCAATCCTACTGGGAAAAGAGATGCTGCTAATGCACTTTTCAATCTTGCAGTTTACAAGCATAACAAGGCAAACATTGTTAATGCTGGGGCGGTTACTTTGCTTATTGATTTGCTGATGGATGATAAGGCTTCCATAACAGATGATGCTTTGGCAGTGCTTGCTTTGCTTCTGGGTTGCTCTCAAGGGCTAGAAGAGATAAGGAATAGCAGAGCATTGGTGCCTCTTCTTATTGATCTTCTGAGATTTGGGTCTGCAAAAGGGAAGGAAAATTCAATAACTCTCCTACTGGGGTTGTGTAAAGAAGAAGGTGAGCTTGTGGCAAGGCGTCTCTTGGCAAACCCAAGGAGTATTCCTTCTCTTCAAAGCTTGGCTGCTGATGGTTCTTTGAGAGCTAGAAGAAAGGCTGATGCATTGCTTCGCTTGCTTAATAGGTGCTGCTCACAACCTCATCATTCTATTTGA 2052 0.404 MNDSTMVIPSDFLPTSSLLDSLINLCNEVCSREKFPFVHARNVASTIRRIKLLSSLFEEIQISDNPHPPSSILCFTEFFSLITKVKLLIQECKDGSYLWGLIQLEFISNQFYALAKEMGRVLDTLPLSLLNITTDIREQLELLHKQTKRVELFIDSRDLQRRDQLLQVIANNSLPNKKSKDFVDLGKVEEILSSIGLKNPSDYDREISKLEAEAQNQAGTGGLMVVSNINNLLSLVSHSKSMLFRDGENKRYEGNCMPLSEFLSINIHHGSPSSQSMPLNIPDEFLCSISLQLMRDPVIVSSGHTYDRNSIAQWINSGHYTCPKSGQRLAHKALIPNYALKSLVQQWCYENKVPVNDPTYSLSDGKSSKKNSNENAVDHISGNKGSKDAVKMTAEFLVGKLATGSVDVQRKAAYELRLLAKSGMDNRRIIAEAGAIPFLVTLLGSHDPRIQEHAVTALFNLSIFDNNKILTMAAGAVENIIEVLESGKTMEARENAAAAIFSLSMVDDNKVIIGAHARAIPALVGLLKEGNPTGKRDAANALFNLAVYKHNKANIVNAGAVTLLIDLLMDDKASITDDALAVLALLLGCSQGLEEIRNSRALVPLLIDLLRFGSAKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSI* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03937 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Rops11g03937 683 Pfam Armadillo/beta-catenin-like repeat 509 546 IPR000225 GO:0005515
Rops11g03937 683 Pfam Armadillo/beta-catenin-like repeat 425 462 IPR000225 GO:0005515
Rops11g03937 683 PANTHER U BOX DOMAIN-CONTAINING 41 677 - -
Rops11g03937 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 357 IPR013083 -
Rops11g03937 683 MobiDBLite consensus disorder prediction 359 380 - -
Rops11g03937 683 FunFam RING-type E3 ubiquitin transferase 489 676 - -
Rops11g03937 683 SUPERFAMILY ARM repeat 393 672 IPR016024 -
Rops11g03937 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Rops11g03937 683 SMART arm_5 589 630 IPR000225 GO:0005515
Rops11g03937 683 SMART arm_5 548 588 IPR000225 GO:0005515
Rops11g03937 683 SMART arm_5 423 463 IPR000225 GO:0005515
Rops11g03937 683 SMART arm_5 507 547 IPR000225 GO:0005515
Rops11g03937 683 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Rops11g03937 683 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Rops11g03937 683 Gene3D - 513 672 IPR011989 -
Rops11g03937 683 Gene3D - 363 512 IPR011989 -
Rops11g03937 683 CDD RING-Ubox_PUB 282 334 IPR045210 -
Rops11g03937 683 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Rops11g03937 683 SUPERFAMILY RING/U-box 269 356 - -
Rops11g03937 683 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Rops11g03937 683 MobiDBLite consensus disorder prediction 359 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03937 Rops-Chr11 73482156 73484207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03937 16 678 U-box Gene Family AT3G46510 37.519 3.62e-122 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03937 - - gmx:100793498 987.252