Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03928 ATGGCTCCGAACCTAGAATGTCGTATGTACGAGGCCAAGTACCCAGAGGTAGACATGGCGGTGATGATACAGGTGAAGAACATAGCCGACATGGGTGCTTACGTGTCCCTGCTTGAATACAACAACATCGAAGGTATGATCTTGTTCTCCGAGCTTTCTCGCCGTCGGATTCGTAGTGTTAGCAGCCTCATCAAGGTGGGTCGAATCGAACCCGTTATGGTCCTTCGTGTCGACAAGGAAAAAGGTTACATCGATCTCAGCAAACGTAGGGTCTCCGAAGAAGACATTCAAGCCTGCGAAGAGAGGTACAACAAAAGCAAACTTGTCCACTCCATCATGCGCCACGTGGCTGAAACCTTGAATATCGATTTAGAGGAGTTGTATGTTCATATTGGATGGCCTTTGTATCGCAAATATGGTCATGCTTTTGAGGCATTCAAAATAATTGTGAATGACCCTGATTCAGTTTTGAATGCTCTCACCCGTGAAGTCAAGGAATGTGGCCCTGATGGGCAAGAGGTAACCAAGGTGGTACCTGCTGTAACTGAAGAAGTGAAGGATTCTTTGGTGAAGAATATTAGAAGACGAATGACCCCGCAACCATTGAAAATTAGGGCGGATATTGAAATGAAATGTTTTCAGTTTGATGGAGTTCTTCACATCAAGGAGGCAATGCGGAAGGCTGAAGCTGCTGGAAATAATGACTGTCCTGTGAAAATTAAACTTGTTGCTCCCCCACTTTACGTTCTTACCACCCAGACTCTTGACAAGGAGCAAGGAATATTGGTTCTCAACAATGCCATTGCTTCTTGCACTGAATCAATAGAATCACACAAGGGTAAACTTGTGGTCAAGGAGGGAGCCAGAGCAGTGAGTGAGCGTGATGATAAATTGCTTGCTGAGCACATGGCTAAGCTACGCCAAGATAATGAAGAGGTCAGTGGTGATGAAGACAGTGAGGAGGAAGAAGATACAGGAATGGGAGAGGTTGATGTGGAGAACAATAATTCTGGGATAACTGAGTGA 1026 0.4532 MAPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLNIDLEELYVHIGWPLYRKYGHAFEAFKIIVNDPDSVLNALTREVKECGPDGQEVTKVVPAVTEEVKDSLVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKEAMRKAEAAGNNDCPVKIKLVAPPLYVLTTQTLDKEQGILVLNNAIASCTESIESHKGKLVVKEGARAVSERDDKLLAEHMAKLRQDNEEVSGDEDSEEEEDTGMGEVDVENNNSGITE* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03928 341 SUPERFAMILY Nucleic acid-binding proteins 7 89 IPR012340 -
Rops11g03928 341 Pfam Eukaryotic translation initiation factor 2 alpha subunit 127 257 IPR011488 GO:0003723|GO:0003743
Rops11g03928 341 SUPERFAMILY eIF-2-alpha, C-terminal domain 200 316 IPR024055 -
Rops11g03928 341 Gene3D - 3 91 IPR012340 -
Rops11g03928 341 FunFam Eukaryotic translation initiation factor 2 subunit alpha 92 196 - -
Rops11g03928 341 Pfam S1 RNA binding domain 15 89 IPR003029 GO:0003676
Rops11g03928 341 CDD S1_IF2_alpha 15 90 IPR044126 GO:0003723
Rops11g03928 341 MobiDBLite consensus disorder prediction 303 341 - -
Rops11g03928 341 Coils Coil 303 323 - -
Rops11g03928 341 Gene3D Translation initiation factor 2; subunit 1; domain 2 92 196 IPR024054 -
Rops11g03928 341 SMART S1_6 16 89 IPR022967 -
Rops11g03928 341 SUPERFAMILY eIF2alpha middle domain-like 91 196 IPR024054 -
Rops11g03928 341 FunFam Eukaryotic translation initiation factor 2 subunit alpha 4 91 - -
Rops11g03928 341 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 330 IPR011488 GO:0003723|GO:0003743
Rops11g03928 341 MobiDBLite consensus disorder prediction 313 329 - -
Rops11g03928 341 FunFam Eukaryotic translation initiation factor 2 subunit 1 202 324 - -
Rops11g03928 341 ProSiteProfiles S1 domain profile. 18 89 IPR003029 GO:0003676
Rops11g03928 341 Gene3D EIF_2_alpha 202 324 IPR024055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03928 Rops-Chr11 73421091 73423957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03928 2 341 Eukaryotic Initiation Factors Gene Family AT5G05470 81.232 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03928 K03237 - gmx:100805950 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03928 11 73421091 73423957 Rops11g03928 11 73421091 73423957 ECH