Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03925 ATGGCTGGGAATTCCCCATGTGCTTCATGCAAGCTTCTGAGACGCCGTTGCGCCAAAGATTGCATCTTTGCTCCTTATTTCCCTTCTGATGATCCTCAAAAGTTTGCTATAGTTCACAAGGTTTTCGGTGCTAGCAACGTTAGCAAAATGCTGCAGGAACTTCCAGTTCACCAGAGAGTAGATGCAGTGAGCAGTTTAGTGTATGAAGCACATGCAAGAGTCAGGGACCCGGTTTATGGTTGTGTTGGAGCCATATCCTATTTGCAAAACCAGGTTTCTGAACTTCAAATGCAGCTAGCAGTAGCACAAGCTGAGATCCTCTGCATCCAGATGCAACATGAGCCAGTAATGCCAAATCCAGAAATGGAACTAGATCAGAAATCTTACCTTCTCCAAAATGACCTCCCTCAGTACCTTAATTTCCCTTCTTCAAGCAATGTAATTCAAGATTCTCTCTCAAGAGAGAGCATATTTGGACATGACATGGTTTCTTGA 495 0.4384 MAGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRVDAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPVMPNPEMELDQKSYLLQNDLPQYLNFPSSSNVIQDSLSRESIFGHDMVS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03925 164 Coils Coil 85 105 - -
Rops11g03925 164 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Rops11g03925 164 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Rops11g03925 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03925 Rops-Chr11 73385382 73386293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03925 3 131 AS2 family AT2G30130 81.955 6.75e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops11g03925 LOB 2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03925 - - gmx:121173085 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03925 11 73385382 73386293 Rops11g03925 11 73385382 73386293 ECH