Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03915 ATGGTGCAGAGAAAAAGGCATTTGCATCAATCCAAGCATCCATTCGATGCTTATCCATTTGAGGCATTAGTGTTTGGCTCATGGCAAGCTGCGGAGCTCATAAAAATTGAGTCAGGAACTATGACCTTGTATTTTATAGATAATCACCATATGGCTATGGAGAAAGGCCCCGTTTCAGACATTCGGATAAGGTCAAGGAAAGCTACTTTATCTGATTGCTCCTGCTTTTTACGACCTGGGGTTGATATATGTGTGCTATCAGCCTTTCAATGTAGTAATATACCAGATCAATTTCGTGCTAATCCGGTGTGGATTGATGCTAAAATAAATTCCATAGAGAGAAAACCACACAAATCCAACTGCTCGTGTCAGTATTATGTAAACTTCTATGATGATGAAGGTTCACTTGGTACAGAGATAAGAACTCTAAGTAAGGAGGTTAGAGTAGTTGGAATAAATCAAATTTCTATCCTCCAAAGGCTTGAACGTAATAGTTGTGAAGATCTGCACTATCGGTGGGCTTCATCTGAAGACTGCTCTGCAGTTTCACAAACTAAATTACTCTTAGGGAAATTTTTATCTGATCTTTCATGGTTAGTTACAGCATCTGTTTTAAAGAAGGTTTCATTCTGTGTAAAATCAGTGGGAAACAAGATTTTGTATCAGATTCTGGGTAGTGGAAGTGCTAGATCTTCACTAAACACTGCTTCTCACATAAATGTTGTGAATTTCAAAGAAAAAGATGACGTATTAGCACCCATTGTTTCTCAAGTTGATGTATCTGACATCAATAGAACTAACCATGCACATGATTCTGGCAAAGATGAAGTGTCATCATCTCATAATATCGAGGGCTTACGACGTTCCAAACGTCGAAACACCCAACCTGATCGTTACTTAGGTTGTGATGTTTCCAAGTTGGAGGTTGGTAACTTTCGAACCTGGCCATACAAGAGATACAAGAGCCCAATAAAGGATGTTGACAGTAATAAAAAGGTCAATAAGGAAACTGTAGTGTACAGCAGGAGGAATAAAACCAAACAAGTAAAGTCTGGAGTTGGGAATCAAAATCAAAATGAACATCAAACTCAATTTGCTAGTATTGACCAGTTTACTTTTGAGCCCAACAATCATCCTACAATGTCAGGTGATTCACAAAAGGTAGATTCTTCAAGGCATCATTATAATCTGAGATCCCGTAAGCGTCAGGGGAATTCATTTGAACTGGATGATATGGATCTTGAAACTAGATGGGAAGGCATAAATTCCAATAAAGGAGTTCAGCAGAAAAGACATGGTTCAACCTATTCAAGAAACAGAAATCATCATGAAGAAGGATCTCATAAAGGCAGAACCTTAAATGCAGCTGAATACAAGGAAATGATAGATTCATACTTAAAGAATATTAATACAATGCCAACTGAAGAAGAGCCACCTATTACTGACCAGTGGAAGGAAACAAGCAACTTGGAGCAAAAAAGGGTAACAGATATATCCCAAAGAGGGGATGAGGAAGAAATGTCTGAAACGGATATGTTATGGGGAGAAATGGAAATGTCAATGGCAGAAAGTTATCTTCTTGAAGGAACAGAGGGTTCAAATGCAGTCATTGAGGAAGAATCCAAGAATACTTGTCCACACGATTATAGATTGAATGAGGAAATTGGAATTTACTGTCTTAGATGTGGCGTTGTGAAAACTGAGATAAGAGATGTTACGGCACCTTTTATTGAACGCCCAGGAAGAAGGCACCAAGAGGAGATGCAATGCGGTGAAGAGACAGAGCCAAAGGCTGATAAAGATGATGATGATTCCCATTTGTTCTTGCCTCATGCTTCTCGTGATGAACCTATATCTATAGAAAATGACAACGTTTGGACATTGATTCCCGAACTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCTTTCCAATTTATTTGGCAAATCATTGCAGGGTCTATAGAACCGGCACTTATGGAAGCAGAATCCGAAAGAAGAGGCGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACTTTTCTCATTATTGCGTTTCTTGTTAGCTATTTGAAGTTATTCCCAGGGAAGAAACCTCTAATCCTTGCTCCAAAAACTACACTTTATACTTGGTATAAAGAATTTATCAAGTGGCAGATTTCTGTGCCAGTGTATCTGATTCATGGTCGAAGAAACCAGAGAGATTTCAAGGAAAAACAATTGGCTCTTCCTGGAGTTCCAAATCCCACTCGTGATGTCAAGCATGTTTTGGATTGCCTAGACAAGATACAAAAGTGGCATGCACACCCCAGTGTTCTGGTTATGGGCTATACTTCATTTTTATCACTAATGCGAGAGGATTCAAAGTTTGAACACAGAAAGTATATGGCTAAAGCATTGAGGGAAAACCCTGGGATCCTAATACTAGATGAAGGGCACAATCCTAGAAACACTAAATCAAGGTTGAGGAAAGGCTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCGGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACACTTTGCTTGGCAAGACCAAGGTTTGTTCATGAAGTTCTGAATGAATTAGATCCAAAATATGGGAGGAATAGTAAAATATCAGAGAAAGCACGCCATTTACAAGAGTCACGGGCTAGGAAATTCTTCTTGGACAACATTGCTAAGAAAATTGATTCAGATGATGGTGAGGAGAGAAAGAAGGGTCTAAACATGTTAAGAAAAATCACAAGTGGTTTTATAGATGTTTATGATGGTGGGAATTCTGAAAATCTTCCTGGTTTACAAATTTATACGTTGCTAATGAATACAACTGATGTGCAGCATGAGATGTTGCAGAAACTGCACAGGAAAATGGCTGAGTGCAATGGATACCCTCTGGAGGTAGAACTTTTGATAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCGCCATGTGCGACTAAGTTTTTCCCTTTGGCTCAATTGAAGAAGCTAGAGAAACGCAAGTTTGATTTGAAAATAGGGTCAAAAGTAAGATTTGTTTTGAGCCTTGTCCATCGAGTTGTGAAGAAGGAGAAGGTTCTCATCTTTTGCCACAACCTTGCACCTGTGAGGTTATTAGTAGAGTTATTTGAGAAGTTCTTCAACTGGAAAAAGGGTCGAGAAATTTTGTTGCTTAATGGGGAACTAGAGCTCTTTGAAAGGGGAAAAGTGATAGATAAGTTTGAGAACCCTGGTGGAGTTTCAAAGATACTGCTTGCTTCAATTACAGCTTGTGCAGAAGGTATTAGTCTCACAGCAGCTTCTCGGGTGATTTTTTTGGACTCAGAGTGGAATCCATCGAAAACAAAGCAAGCAATTGCACGGGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGCTCTTGGCATCAGGCTCATTAGAGGAAGATAAGTACAGTAGAACCACTTGGAAAGAGTGGGTTTCCAGCATGATTTTCAGTGAGGCATTTGTGGAGGACCCTTCCCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGGGAGATAACTCTAAATCTAAAGCAATCCATATGATCTTGAAGAATGAAAAGGCTTCAACAAACTGA 3654 0.3922 MVQRKRHLHQSKHPFDAYPFEALVFGSWQAAELIKIESGTMTLYFIDNHHMAMEKGPVSDIRIRSRKATLSDCSCFLRPGVDICVLSAFQCSNIPDQFRANPVWIDAKINSIERKPHKSNCSCQYYVNFYDDEGSLGTEIRTLSKEVRVVGINQISILQRLERNSCEDLHYRWASSEDCSAVSQTKLLLGKFLSDLSWLVTASVLKKVSFCVKSVGNKILYQILGSGSARSSLNTASHINVVNFKEKDDVLAPIVSQVDVSDINRTNHAHDSGKDEVSSSHNIEGLRRSKRRNTQPDRYLGCDVSKLEVGNFRTWPYKRYKSPIKDVDSNKKVNKETVVYSRRNKTKQVKSGVGNQNQNEHQTQFASIDQFTFEPNNHPTMSGDSQKVDSSRHHYNLRSRKRQGNSFELDDMDLETRWEGINSNKGVQQKRHGSTYSRNRNHHEEGSHKGRTLNAAEYKEMIDSYLKNINTMPTEEEPPITDQWKETSNLEQKRVTDISQRGDEEEMSETDMLWGEMEMSMAESYLLEGTEGSNAVIEEESKNTCPHDYRLNEEIGIYCLRCGVVKTEIRDVTAPFIERPGRRHQEEMQCGEETEPKADKDDDDSHLFLPHASRDEPISIENDNVWTLIPELREKMHVHQKKAFQFIWQIIAGSIEPALMEAESERRGGCVISHAPGAGKTFLIIAFLVSYLKLFPGKKPLILAPKTTLYTWYKEFIKWQISVPVYLIHGRRNQRDFKEKQLALPGVPNPTRDVKHVLDCLDKIQKWHAHPSVLVMGYTSFLSLMREDSKFEHRKYMAKALRENPGILILDEGHNPRNTKSRLRKGLMKVETELRILLSGTLFQNNFCEYFNTLCLARPRFVHEVLNELDPKYGRNSKISEKARHLQESRARKFFLDNIAKKIDSDDGEERKKGLNMLRKITSGFIDVYDGGNSENLPGLQIYTLLMNTTDVQHEMLQKLHRKMAECNGYPLEVELLITLGSIHPWLIKTAPCATKFFPLAQLKKLEKRKFDLKIGSKVRFVLSLVHRVVKKEKVLIFCHNLAPVRLLVELFEKFFNWKKGREILLLNGELELFERGKVIDKFENPGGVSKILLASITACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLASGSLEEDKYSRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVEGDNSKSKAIHMILKNEKASTN* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03915 1217 MobiDBLite consensus disorder prediction 420 454 - -
Rops11g03915 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1024 1186 IPR001650 -
Rops11g03915 1217 MobiDBLite consensus disorder prediction 263 297 - -
Rops11g03915 1217 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1216 IPR044567 GO:0080188
Rops11g03915 1217 CDD DEXHc_ATRX-like 636 865 - -
Rops11g03915 1217 MobiDBLite consensus disorder prediction 580 604 - -
Rops11g03915 1217 MobiDBLite consensus disorder prediction 264 297 - -
Rops11g03915 1217 SMART ultradead3 632 868 IPR014001 -
Rops11g03915 1217 SMART helicmild6 1050 1135 IPR001650 -
Rops11g03915 1217 Pfam SNF2-related domain 637 958 IPR000330 GO:0005524|GO:0140658
Rops11g03915 1217 CDD SF2_C_SNF 1010 1146 - -
Rops11g03915 1217 Gene3D - 611 902 IPR038718 -
Rops11g03915 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 869 IPR027417 -
Rops11g03915 1217 MobiDBLite consensus disorder prediction 438 454 - -
Rops11g03915 1217 Gene3D - 998 1212 IPR027417 -
Rops11g03915 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 661 860 IPR014001 -
Rops11g03915 1217 Pfam Helicase conserved C-terminal domain 1018 1134 IPR001650 -
Rops11g03915 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 936 1195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03915 Rops-Chr11 73239554 73244205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03915 1061 1153 RAD5 or RAD16-like Gene Family AT5G05130 43.750 4.73e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops11g03915 SNF2_N 1.3e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03915 K10875 - gmx:100811703 1624.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03915 11 73239554 73244205 Rops11g03915 11 73239554 73244205 ECH
Rops11g03915 11 73239554 73244205 Rops9g00790 9 12318245 12326230 PCT