Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03891 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTCCAACTTCTTCGTTCTATTACAAACTCTCATGCTCTAAACAAAACCTCGATCATAATCGATGCATCAAAGTATATCGAAGAGCTAAAGCAAAAAGTAGAAACACTGAACCAAGACATAGCCACTGCACAAACTTCAAGTGACCAAAATACTTTGCCTATGGTTACAGTAGAAACCCTAGAAAAGGGTTTTCTTATAAATGTTTTTTCAGCAAAGAATTGCCCGGGTCTGCTTGCTTCCATATTGGAGTCCTTTGAAGAGATGGGTCTTAATGTGGTGGAAGCTAGGGTTACTTGTACTGACACATTTCGATTTGAAGCTGTTGGAGGAGAAAATGAAGAACACGGTGAAAGTATTGATGCACAAGCTGTGAAATTGGCAATGGGACAAGCAATAAAGAACTGGAGTGAAAGTACCGATCAAAAGTAA 471 0.397 MVSREQKRAALHEKLQLLRSITNSHALNKTSIIIDASKYIEELKQKVETLNQDIATAQTSSDQNTLPMVTVETLEKGFLINVFSAKNCPGLLASILESFEEMGLNVVEARVTCTDTFRFEAVGGENEEHGESIDAQAVKLAMGQAIKNWSESTDQK* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03891 156 ProSiteProfiles ACT domain profile. 80 152 IPR002912 -
Rops11g03891 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Rops11g03891 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 66 IPR036638 GO:0046983
Rops11g03891 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03891 Rops-Chr11 72893143 72894913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03891 11 142 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.472 2.74e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03891 - - gmx:100814138 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03891 11 72893143 72894913 Rops9g00769 9 12131047 12133128 ECH
Rops11g02301 11 38710533 38711901 Rops11g03891 11 72893143 72894913 ECH
Rops11g03891 11 72893143 72894913 Rops11g03891 11 72893143 72894913 ECH
Rops11g03891 11 72893143 72894913 Rops9g00769 9 12131047 12133128 PCT