Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03887 ATGGATTGTTGCTTTTCATCATCACGTTCTTATTATTCGAAATCATTATGCTCGGCTTGTTATGAAGGAACTAGGAGCATAATCAACGTAATGAACAATCTCGAAAGTGAGAAGGCAAAAGCAATCGCAAGTTCCGACGGTTCTTCAGTTTCAAGGCCTAATATTCATAAACTTGATGATTGTAAGAGATGGTGTTTAGAGCAGATAGACCAAATTAATCAACAAAATGAAGATTTAGCATTCGTGAGAGGCTCCATTGCAGCCTTGAGAGCACAGATTTACACTGATATATTGATCAGTCCAAGTAGCCATGATCCACCTATACCTGCCCATAAGTTCGTTTTGGCTGCAAGATCAGAAATTTTTAAGAACATGTTAGAGTGTGATGAATGCAAAGCTCCACCCAATAACACCATAACCATACCCGATATGAACCATGAAGGATTAGAGTCTCTGCTGGATTTTCTGTATAATAGGACCTTGGCTGCGGAAAAATTGGAGAAATATGCCCATGCCTTGTTCCAAGCAGCTGATAAGTATGTTATCCCAGACTTGCTGAAACACTGTGAAAAGTATCTGCTCAGTTCACTTAGCACCTCTAATGCACTTGAGACGCTAGAGATTGCTGACACTTGTTCCAACCAAAACTTGAAGGAGACAGCCTTGAATTTCCTAGTTAAAAACATGGAGCATATGGTGTCATCCCCTAAATTTGAAGTTTTTGTACACAGGAGTCCACATTTAACTGTGCAACTAGTTACAAGGGCATTCGTGAATGATGCCTGTTCTCCCCTAGGAAAAAGTTGTTTTGCTGAAAATTTTGGTGTGACATCTAAGAGTGGATTGGTTGCTTGTAGCTTCATACATCTCACAACAGCTTTGTTGGCTCCTCCAGTTGGACTATTCGCAATTTCAAATAATGTTTTCTATACATCACAATTGTATAATAAATCAACAATATGA 963 0.3904 MDCCFSSSRSYYSKSLCSACYEGTRSIINVMNNLESEKAKAIASSDGSSVSRPNIHKLDDCKRWCLEQIDQINQQNEDLAFVRGSIAALRAQIYTDILISPSSHDPPIPAHKFVLAARSEIFKNMLECDECKAPPNNTITIPDMNHEGLESLLDFLYNRTLAAEKLEKYAHALFQAADKYVIPDLLKHCEKYLLSSLSTSNALETLEIADTCSNQNLKETALNFLVKNMEHMVSSPKFEVFVHRSPHLTVQLVTRAFVNDACSPLGKSCFAENFGVTSKSGLVACSFIHLTTALLAPPVGLFAISNNVFYTSQLYNKSTI* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03887 320 SUPERFAMILY POZ domain 89 196 IPR011333 -
Rops11g03887 320 Gene3D Potassium Channel Kv1.1; Chain A 66 197 IPR011333 -
Rops11g03887 320 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 16 261 IPR044784 -
Rops11g03887 320 CDD BACK 198 238 - -
Rops11g03887 320 ProSiteProfiles BTB domain profile. 95 165 IPR000210 GO:0005515
Rops11g03887 320 Gene3D - 198 270 - -
Rops11g03887 320 CDD BTB_POZ_ZBTB_KLHL-like 94 180 - -
Rops11g03887 320 SMART BTB_4 95 197 IPR000210 GO:0005515
Rops11g03887 320 Pfam BTB/POZ domain 93 196 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03887 Rops-Chr11 72819825 72834614 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops11g03887 BTB 2.7e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03887 K10523 - gmx:100777561 380.178