Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03885 ATGGATTGTTGTGTCTGCACAACTATGCCATTAATATTAAGGCCTCCGAGGAATACGATATGTGGGGTTTGTTATGAAGGAATTAGGAGCATAATCAACATGATGAACAATCTTGAAAGTGAAAAAGTAAAAGCAATCACTATTCCAAATGATTCTCCAGTCTCAAGGCGAAATTCGAGTAAGACACTTGATGATTGTATAAGATGGTGTTCAGAGCAGATAGACCAATTTAATCAACAAAAAGAAGACTTAGCATTTCTGAGAGGCTTTGTTACTGCCTTCAAAGCACAGATTCACACTGATATATTGATCAGTCCAGGCAGCCATGGTCCACCTATACCTGCCCATAAGTCCGTTTTGGCTACAAGATCAGAAATTTTTAAGAACATGCTAGAGTGTGATGAATGCAAAGCTCCACCCAATAACACCATAACCATACCCGATATGAACCATGAAGAACTAGAGTCTCTGCTGGAGTTTCTCTATAGTGGGACCTTGGCTGTGGAAAAATTGGAGAAACATGTCTATGCCTTGTCACAAGCAGCTGATAAGTATGTTATCCCACACTTGTTGAAACACTGTGAAAAGTACCTGCTCAGTTCACTTAGCACCTCTAATGCACTTGAGACGCTAGAGATTGCTGACATTTGTTCCAACCAAAACTTGAAGGAAACAACCTTGAATTTCTTGATTAAAAACATTGAGCAAATGGTGTCATCCCCTAAATTTGAAGCTTTTGTACACAGGAGTCCACATCTAACTGTGCAACTGGTTACAAGGGCATTTGTGAATGGTGCCAAATAA 804 0.3968 MDCCVCTTMPLILRPPRNTICGVCYEGIRSIINMMNNLESEKVKAITIPNDSPVSRRNSSKTLDDCIRWCSEQIDQFNQQKEDLAFLRGFVTAFKAQIHTDILISPGSHGPPIPAHKSVLATRSEIFKNMLECDECKAPPNNTITIPDMNHEELESLLEFLYSGTLAVEKLEKHVYALSQAADKYVIPHLLKHCEKYLLSSLSTSNALETLEIADICSNQNLKETTLNFLIKNIEQMVSSPKFEAFVHRSPHLTVQLVTRAFVNGAK* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03885 267 ProSiteProfiles BTB domain profile. 100 170 IPR000210 GO:0005515
Rops11g03885 267 SMART BTB_4 100 202 IPR000210 GO:0005515
Rops11g03885 267 Pfam BTB/POZ domain 96 201 IPR000210 GO:0005515
Rops11g03885 267 CDD BACK 203 243 - -
Rops11g03885 267 Gene3D - 203 265 - -
Rops11g03885 267 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 20 266 IPR044784 -
Rops11g03885 267 Gene3D Potassium Channel Kv1.1; Chain A 70 202 IPR011333 -
Rops11g03885 267 SUPERFAMILY POZ domain 86 200 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03885 Rops-Chr11 72818922 72830793 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops11g03885 BTB 1.6e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03885 K10523 - gmx:100777561 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03885 11 72818922 72830793 Rops11g03885 11 72818922 72830793 ECH