Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03884 ATGGATTGTTGCTTCCATACAAGGGCATCATCATTTACTTTGGGTGCGCCTGCGCGGAATTCAGTATGCCCGGCTTGTTATGAAGGAACTAGGAGCATATTCAACGTAATTAACAATCTCGAAAGTGAGAAGGCAAAAGCAGACGGTTCTTCAGTTTCAAGGCCTAATATTTATAGACTTGATGATTGTAAGAGATGGTGTTTAGAGCAGAGAGACCAAATTAATCAACAAAATGAAGATTTAGCATTCTTGAGAGGCTCTATTGCAGCCTTGAGAGCACCGATTTACACTGATATATTGGTCAGTCCAGGCAGCCATGATCCACCTATACCTGCCCATAAGTTTGTTTTGGCTGCAAGATCAGAAATTTTTAAGAACATGCTAGAGTGTGATGAATGCAAAGCTCCACCCAATAACACCATAATCATACCCGACATGAACCATGAAGCATTAGAGTCTCTGCTGGATTTTCTCTATAGTAGGACCTTGGCTGCGGAAAAATTGGAGAAACATGTCTATACCTTGTTCCAAGCAGCTGATAAGTATGTTATCCCAGACTTGCTGAAACACTGTGAAAAGTACCTGCTCAGTTCACTTAGCACCTTTAATGCACTTGAGACGCTAGAGATTGCTGATACTTGTTCCAACCAAAACTTGAAGGAGACAACCTTGAATTTCTTAGTTAAAAACATGAAGCATATGGTGTCATCCCCTAAATTTGAAGCTTTTATACACAGGAGTCCACATTTAACTGTGCAACTAGTTACAAGGGCATTCGTGAATGGTGCCAAATAA 795 0.4063 MDCCFHTRASSFTLGAPARNSVCPACYEGTRSIFNVINNLESEKAKADGSSVSRPNIYRLDDCKRWCLEQRDQINQQNEDLAFLRGSIAALRAPIYTDILVSPGSHDPPIPAHKFVLAARSEIFKNMLECDECKAPPNNTIIIPDMNHEALESLLDFLYSRTLAAEKLEKHVYTLFQAADKYVIPDLLKHCEKYLLSSLSTFNALETLEIADTCSNQNLKETTLNFLVKNMKHMVSSPKFEAFIHRSPHLTVQLVTRAFVNGAK* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03884 264 SUPERFAMILY POZ domain 90 198 IPR011333 -
Rops11g03884 264 SMART BTB_4 97 199 IPR000210 GO:0005515
Rops11g03884 264 Gene3D - 201 262 - -
Rops11g03884 264 ProSiteProfiles BTB domain profile. 97 167 IPR000210 GO:0005515
Rops11g03884 264 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 22 263 IPR044784 -
Rops11g03884 264 Gene3D Potassium Channel Kv1.1; Chain A 68 200 IPR011333 -
Rops11g03884 264 CDD BTB_POZ_ZBTB_KLHL-like 96 182 - -
Rops11g03884 264 Pfam BTB/POZ domain 95 198 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03884 Rops-Chr11 72805322 72806562 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops11g03884 BTB 3e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03884 K10523 - gmx:100814664 387.497