Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03870 ATGAATTCATCATCCACACAGTTCGTTTCCTCAAGAAGGATGAGTGTGTACGAGCCTATGCACCAGATTAGTATGTGGGGAGAAAGCTTCAAAAATAATGGTAATTTAACTGCGCCAATGCCCTTAATTGACGAGGCAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGTATGCTGGGAACATCTAACAAGTATGACCAAGAAGCTAATAAACCTACTGAAAAGATGCAAAGACGTCTTGCACAAAATCGAGAGGCTGCCCGTAAGAGCCGTCTGAGAAAGAAGGCCTATGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGATCGTGCAAGACAGCAGGGAATGTATATAGGTGGTGGGTTGGATTCTAATCATCTGGGTTTTGCTGGATGTGTAAACTCAGGAATTACAACCTTTGAGATGGAGTATGGACATTGGGTGGACGAGCAAAATAGGCAAATCTCAGAAGTGAGAAATGCTTTGAATGCTCATATTGGTGACATGGAGCTCAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCAGATGTTTTCTACGTTATGTCCGGTATGTGGAAATCAACTGCTGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGCCCGTCTGAGCTTCTCAAGGTTCTTGGTCCAATGATTGAACCATTGACAGAGCAACAACGGTTGGATATAGATAACCTTGAACAGTCATGTCGGCAAGCAGAAGATGCCCTTTCACAAGGCATGGACAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAATTCGTTGAAGGAACTTACATTCCACAGATGGCTTCTGCAATGGAGAAGTTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCAGACCATCTTCGGCAGGAAACCTTGCAGCAACTGTCTCGAATACTGACAATCCGTCAGTCAGCTCGATGCTTGCTTGCTTTGGGGGAATATTTCAATCGTCTGAGGACTTTGAGCTCACTATGGTCTAATCGACGCCGTGAACCTGCTTAG 1089 0.4481 MNSSSTQFVSSRRMSVYEPMHQISMWGESFKNNGNLTAPMPLIDEADMKLDSQSEDASHGMLGTSNKYDQEANKPTEKMQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELDRARQQGMYIGGGLDSNHLGFAGCVNSGITTFEMEYGHWVDEQNRQISEVRNALNAHIGDMELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKSTAERFFLWIGGFRPSELLKVLGPMIEPLTEQQRLDIDNLEQSCRQAEDALSQGMDKLRQTLADSVAAGQFVEGTYIPQMASAMEKLEALVSFVNQADHLRQETLQQLSRILTIRQSARCLLALGEYFNRLRTLSSLWSNRRREPA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03870 362 SUPERFAMILY Leucine zipper domain 78 118 IPR046347 GO:0003700|GO:0006355
Rops11g03870 362 Gene3D - 76 126 - -
Rops11g03870 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
Rops11g03870 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Rops11g03870 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
Rops11g03870 362 MobiDBLite consensus disorder prediction 53 76 - -
Rops11g03870 362 Coils Coil 246 273 - -
Rops11g03870 362 FunFam BZIP family transcription factor 77 126 - -
Rops11g03870 362 Pfam bZIP transcription factor 77 111 IPR004827 GO:0003700|GO:0006355
Rops11g03870 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Rops11g03870 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Rops11g03870 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 360 - -
Rops11g03870 362 Coils Coil 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03870 Rops-Chr11 72660175 72668008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03870 1 362 Calmodulin-binding Proteins AT5G10030 69.231 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops11g03870 DOG1 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03870 K14431 - gmx:100793353 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03870 11 72660175 72668008 Rops11g03870 11 72660175 72668008 ECH
Rops2g00891 2 12528417 12536544 Rops11g03870 11 72660175 72668008 PCT