Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03869 ATGGCTGATCACTCTGACTCTTCTCCTCTTGTCCCTCCACTTCCACTCTCTGACCCTTCCGAGATCGACCTCGAAGCTGGTCCCTCTGAACAAATCCAATGCCGGATTTGTCTCGAAACTGATGGTAGAGATTTCATAGCTCCTTGTATGTGCAAAGGTACATCAAAATATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCGTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCTTGAAATTTCGGTTTTTCGTCACCAGAGACATTTTGTTTATTTTTATGGCTGTCCAGCTTGTCATTGCCTCACTGGCATATTTGGTGTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTGTGGGGTTTTGACAGTGAACTGAGCTTTTACTACATATGTGGAGCTTTATTATTTTTTGCGTTGCTTGGCCTTTCTGGGTGCTTTATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAATTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGCATGTGGACTGATTGTACCACATGCTTTGAGAGCTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTATTATTCATAATGGCTTTGATTGTTCTGGGACTTTTTACTGTAATTGGGATATTTTACAGTGTATTGGTGGCTACTATGGTAGGTCAACGGATATGGCAACGTCACTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGTTGATGGAGAGATGACAGGGTCTGATTGGTCTCCCCCGTCCCTCCCACCTGAACATGTTCAGCAGTTGAAAACGTTGGGTCTCCTATGA 972 0.4414 MADHSDSSPLVPPLPLSDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCMCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFMAVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGICADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPSLPPEHVQQLKTLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03869 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 322 - -
Rops11g03869 323 SUPERFAMILY RING/U-box 29 86 - -
Rops11g03869 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Rops11g03869 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Rops11g03869 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Rops11g03869 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Rops11g03869 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03869 Rops-Chr11 72636802 72641298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03869 1 323 C3H Transcription Factor Family AT2G22120 85.802 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03869 - - gmx:100791777 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03869 11 72636802 72641298 Rops11g03869 11 72636802 72641298 ECH
Rops11g03869 11 72636802 72641298 Rops11g03869 11 72636802 72641298 PCT