Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03868 ATGGCAGCTCTGTCTAAGATCTGCCATAAACTTTGCAGCAAAATAACACTCCTATTGGCATTCTTGCTAATAGAACTTATCATCCTCATTTGGAAACTAACATCAGATACACGTCCAATCACCACAAGGCAATTCCTCAAATTCATTGAAGAGAAGCAACCCACAATTCGATACACCAAAAGGTTGAAAGTGGAGGAGCATGTGGAGTGTAGTGTTTGCTTATCGGAATTCAAGGAAGGTGAGAAGGTGAGGAGTTTGGAATGCAAACACACATTTCATAGGGATTGTTTGGACAAATGGTTGAGAGAATATAGGGCTACATGCCCACTTTGTAGAGAACAAGTGCTTCCAGAAGATGTTGTGTCCAAGTTTCGTGAGCTTCAAAATCAGAATGGGAATGATGAGCAACTTCCCTATATGTTATCTGCATTACGTGGTGGTAGTAGGAGTAACTTGCGCAGATTTCTAGGAATTGAAACTTGTCTGCCAGATACATAG 498 0.4096 MAALSKICHKLCSKITLLLAFLLIELIILIWKLTSDTRPITTRQFLKFIEEKQPTIRYTKRLKVEEHVECSVCLSEFKEGEKVRSLECKHTFHRDCLDKWLREYRATCPLCREQVLPEDVVSKFRELQNQNGNDEQLPYMLSALRGGSRSNLRRFLGIETCLPDT* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03868 165 SMART ring_2 70 111 IPR001841 -
Rops11g03868 165 Pfam Ring finger domain 69 112 IPR001841 -
Rops11g03868 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 119 IPR013083 -
Rops11g03868 165 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Rops11g03868 165 SUPERFAMILY RING/U-box 52 118 - -
Rops11g03868 165 CDD RING-H2_PA-TM-RING 69 112 - -
Rops11g03868 165 PANTHER - 1 149 - -
Rops11g03868 165 FunFam Putative RING zinc finger domain superfamily protein 41 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03868 Rops-Chr11 72631711 72632411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03868 69 123 C3H Transcription Factor Family AT1G15100 56.364 4.20e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03868 K16282 - gmx:102668078 182.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00895 2 12623375 12623997 Rops11g03868 11 72631711 72632411 PCT