Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03863 ATGGCGACTACAATGACTTGGAGGTTTGCTGCCAACAATGGCAGCAGTATTGCTGCTAATGATTTGGAAAGAAATGGTGATGCAAAGGCTCAAGATTCAGAGCCTCCAACTCCCCATTCTGTTCTGAAGATGGGATTGAGAGATCGTAGCAGCAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCTCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAACAGAAAGAGCATTCATTGAAGCAGTTATTGGAGCTTATTGATATGCGTGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGTTCACTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTGAGAGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTTTGCTCAGTCTACTCAAGTCCAGTTCTGCGGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCACAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAGCAGCTCCAAAAGGACCTGAAGAATGGAAGTGTAATCGATAGTCTATTGACTGGAGCATTGAAAAATCTCTCCAGCAGTACTGAGAGATTCTGGATTGCCACGATACAGGCAGGAGGAGTGGACATATTAGTGAAGTTACTGACAACAGGGCAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAGGATGCATCTATTTGTTCAAAGTTGTTGACAGCAGAGGCAACGAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGACGCCCCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTATCTGCCCAGTGCAAAGATGCAAGGAAAGAGATAGCCAATTCTAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAATATGCTCAAGCATTACAGGAGAATGCTATGTGTGCTTTAGCGAACATCTCTGGGGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTCGAATCATGCTCCTCACCTACCCAAATTGCTGATACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTGCTAGAGCATCAGATCCTTTGGTAATTGAGCAGACACTGCTTAAGCAATTTAAACCTCACTTGCCCTTCCTCGTTCGGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATGGCAATCCTATACTCTCACTCAAACTTGCAAATTCTGATGCAAAGCATTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAACGCACTCTTGACCCTGTGCAATAGTGAATGCAGTCTATGGCATGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTTCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGGGGTATACCACCGCTTGTGCAACTTTTGGAGTCAGGATCTGTAAAAGCAAAGGAAGACTCAGCAACAATCCTTCGGAACCTATGTGATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTCCCTGCATTGTTATGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTGATTCATAAATCTGATACTGCGACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAATCTAAGACTTATGTTTTAGATGCATTGAGAAGTATGCTTTCTGTTGTTGCTCTTAGTGATCTTCTACGTGAAGGTAGTGCTTCCAGTGATGCAATTGATACAATGATAAAACTATTGAGCTCAACCAAGGAAGAAACTCAGGCAAACTCTGCATCAGCTCTGGCGGGAATTTTTGAAACAAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCCATGAAGTTGCTTAATGTTGAATCTGAAAATATCTTAATGGAGTCCTCGCGCTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGAGGTAGCTGCTATTGCTCGAGATGCATTATCGTCCCTAGTTGCACTAGCTAGCTCTTCAGTTTTGGAAGTCGCTGAGCTGGCAACATGTGCTGTAGCAAATCTTATTTTGGATGTTGAAATTGCTGAGAAAGCTGTTGCGGAAGAAGTTATCTTGCCAGCTACCAGAGTCTTACGTGAAGGCACAATTTCGGGAAAAACACATGCAGCAGCAGCAATTGCACGCCTCTTACATTCTAGGCCAGTTGATTATGCTGTAAACGATTGTGTGAATCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTTCTATTAATGATGGACCTGTTTCCACATCAGATGCTCTAGAAGCACTTGCCATTCTGTCCAGGTCAGAAGAGACCAATGCACATAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAATCCCAATAGTTATTTCTATTGTCAATTCAACGCCAGTGTTACAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCTGCCTGTTGTGTTAGGAGACACTGTTGTTACTGCCTCTGGATGTATATCTTCAATAGCAAGGAGGATCATCAATTCCACTTCTACTAATGTAAAGGTCAAAATTGGAGGAGCTGCAATTCTTACTTGTGCTGCTAAAGTAAATCATCAGAGGCTGGTGGAGGATCTCAATTTATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTTGTTGATATGCTTATTTCTTCACAGGCTAATTTGGGTAATCAGGGTGATGACAATGAGGAAGTCATCAGCATTTGCAGGCATACAGAAGAAGAAGCCAATGATGGTAAATCCAACACTGGCACCGCTATTATATCTGATGCCAACTTAGCTATATGGTTACTGTCAGTTCTTGCTTGCCATGATGAAAAGAGTAAAACTGCAATAATGGAGGCTGGAGCGGTTGAGGTTCTCACTGACAGGATCGCAAATTGTTTCTCACAATATAGTCAGATTGACTATAAAGAAGATAGCAGTATGTGGATTTGTGCTTTGTTGTTGGCGATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACCATGAAATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGATGAATCAGCAAACAGATATTTTGCTGCACAAGCAATAGCTAGCCTAATCTGTAATGGTAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGGGTGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCAGATACTGATATACAGGATCTTCTGGAATTGTCAAATGAATTCTTTTTGGTGCCTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGAAGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTGGTTGATTTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCGCTTGGGCTTTTGACTCAGCTTGCTAGAGATTGTCCATCGAATAAGATTATAATGGTAGAGTCTGGGGCCTTAGAGGCTCTTACTAAGTATCTTTCACTGGGTCCACAAGATGCAACGGAAGAAGCTGCTACGGATCTGTTGGGAATTCTGTTTAGCAGTGCTGAGATACGGAGACATGAGTCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTCCTACGATTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTATTCTCTACTGACCACATTAGAAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTTGAGATTCTTAATACTGGTTTAGAGAGAGAGCAACATGCTGCAATTGCTGCATTAGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGCGATGCTGCTGAATTATGTTGTGTTCTTTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTTGTTTCCCTCCTTGTAACCGAGTATAGTCCTGCTCAGAATTCAGTTGTCCGGGCATTGGATAGACTTGTTGATGATGAGCAATTGGCTGAATTAGTTGCTGCACATGGCGCAGTTATTCCTCTCGTTGGCCTGTTGTATGGGAGGAATTATGTTCTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGATAGGCCTGTTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGGTAAAGTGGTTGAACCCTTGTTTTTTTTGCTGACAAGACAAGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAACATCTTAGAACATCCACAGTGTCGTGCTGATTACACATTGACTTCTCACCAAGTTATCGAGCCACTCATCCCCTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTACTTTTAGAAGAACACCTACAGAAGGATCCAGTGACACAGCAAGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTAGTCAGTATTGCAGTTGTATGGCCAAATGAAATTGCAAAAGAGGGTGGCGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGACCCTTCTATTCCTCATGCTTTATGGGAGTCTGCTGCGTTTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGTTGCTTCGATCTGGCTCTGAAAGCACGATTATTGGTGCGCTAAATGCCCTTCTTGTGTTGGAAAGTGACGATGGAACTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGTGAAGACACTGCTGCAAGACTCTTAGAAGTATTGTTGAACAATGTAAAGATCAGAGAAACCAAAGTTACTAAATCAGCCATCTTACCATTGTCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAAGCAAGGTTATTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACACCTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTCATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCAGGTGGTGTTCAGGTTGTGCTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCGATAACTGCTGCTATTGAAAAGGATTTATGGGCCACTGGAACTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTGGCAATTTCCCACGACTGAGAGCAACTGAACCAGCAACGCTTAGCATTCCACATTTGGTTACATCCTTAAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATACACTTTTTCTGCTCAGGCAAGCGTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCTGCAGATGCTATTCCTTTGTTACAGTACTTAATACAGTCTGGCCCACCTCGGTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGGGGTAATAATATGAAGCAGTCTGTCGGAAACCCGAGTGTTTATTGTAAGCTTACACTTGGAAACACTCCTCCAAGGCAAACCAAGGTGATCTCAACAGGTCCTAATCCAGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATCGACCGGGTGGTAATGCTAGGAGCAGTATCCGGAGAGTACACTCTGTTGCCGGAGAGTAAAAGTGGCCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6471 0.4312 MATTMTWRFAANNGSSIAANDLERNGDAKAQDSEPPTPHSVLKMGLRDRSSSSSMEDPDGTLASVAQCIEQLRQSSSSMQQKEHSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKDLKNGSVIDSLLTGALKNLSSSTERFWIATIQAGGVDILVKLLTTGQSSTLANVCFLLACMMMEDASICSKLLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGALASALMIYDDKAESARASDPLVIEQTLLKQFKPHLPFLVRERTIEALASLYGNPILSLKLANSDAKHLLVGLITMAANEVQDELLNALLTLCNSECSLWHALQGREGVQLLISLLGLSSEQQQECAVSLLCLLSNENDESKWAITAAGGIPPLVQLLESGSVKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKTYVLDALRSMLSVVALSDLLREGSASSDAIDTMIKLLSSTKEETQANSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESENILMESSRCLAAIFLSIKENREVAAIARDALSSLVALASSSVLEVAELATCAVANLILDVEIAEKAVAEEVILPATRVLREGTISGKTHAAAAIARLLHSRPVDYAVNDCVNRAGTVLALVSFLDSSINDGPVSTSDALEALAILSRSEETNAHSKPAWAVLAEFPKSIIPIVISIVNSTPVLQDKAIEILSRLCKDLPVVLGDTVVTASGCISSIARRIINSTSTNVKVKIGGAAILTCAAKVNHQRLVEDLNLSNLCANLVQSLVDMLISSQANLGNQGDDNEEVISICRHTEEEANDGKSNTGTAIISDANLAIWLLSVLACHDEKSKTAIMEAGAVEVLTDRIANCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSDESANRYFAAQAIASLICNGSRGTLLSVANSGVAGGLISLLGCADTDIQDLLELSNEFFLVPYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIIMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYSAAKALESLFSTDHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVTEYSPAQNSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPVCKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAGKVVEPLFFLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIAVVWPNEIAKEGGVIEISKVILQADPSIPHALWESAAFVLASILQFSSEFYLEVPVAVLVRLLRSGSESTIIGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTPDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFGNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDTLFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVISTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03863 2156 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Rops11g03863 2156 SUPERFAMILY ARM repeat 1191 1572 IPR016024 -
Rops11g03863 2156 Gene3D - 1370 1653 IPR011989 -
Rops11g03863 2156 Gene3D - 1183 1369 IPR011989 -
Rops11g03863 2156 Gene3D C2 domain 2035 2156 IPR035892 -
Rops11g03863 2156 FunFam Coatomer beta subunit 1621 2034 - -
Rops11g03863 2156 MobiDBLite consensus disorder prediction 46 60 - -
Rops11g03863 2156 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1201 1245 IPR000225 GO:0005515
Rops11g03863 2156 MobiDBLite consensus disorder prediction 16 60 - -
Rops11g03863 2156 SMART C2_3c 2036 2132 IPR000008 -
Rops11g03863 2156 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1385 1619 - -
Rops11g03863 2156 SUPERFAMILY ARM repeat 1030 1162 IPR016024 -
Rops11g03863 2156 Gene3D - 43 410 IPR011989 -
Rops11g03863 2156 ProSiteProfiles C2 domain profile. 2016 2133 IPR000008 -
Rops11g03863 2156 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 29 2156 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Rops11g03863 2156 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1187 1371 - -
Rops11g03863 2156 CDD C2 2037 2127 - -
Rops11g03863 2156 Gene3D - 655 876 IPR011989 -
Rops11g03863 2156 Gene3D - 451 654 IPR011989 -
Rops11g03863 2156 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2035 2156 - -
Rops11g03863 2156 SUPERFAMILY ARM repeat 1585 2033 IPR016024 -
Rops11g03863 2156 Coils Coil 299 319 - -
Rops11g03863 2156 SMART arm_5 1234 1275 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1735 1774 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1571 1612 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1485 1526 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 96 137 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 569 609 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 486 525 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 735 773 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 313 362 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 527 567 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1316 1357 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1444 1484 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1403 1443 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1862 1902 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 1189 1232 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 648 688 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 270 311 IPR000225 GO:0005515
Rops11g03863 2156 SMART arm_5 138 178 IPR000225 GO:0005515
Rops11g03863 2156 Pfam Armadillo/beta-catenin-like repeat 106 136 IPR000225 GO:0005515
Rops11g03863 2156 Pfam Armadillo/beta-catenin-like repeat 527 567 IPR000225 GO:0005515
Rops11g03863 2156 Pfam C2 domain 2035 2131 IPR000008 -
Rops11g03863 2156 SUPERFAMILY ARM repeat 426 732 IPR016024 -
Rops11g03863 2156 Gene3D - 877 1173 IPR011989 -
Rops11g03863 2156 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2034 2153 IPR035892 -
Rops11g03863 2156 SUPERFAMILY ARM repeat 661 991 IPR016024 -
Rops11g03863 2156 SUPERFAMILY ARM repeat 69 391 IPR016024 -
Rops11g03863 2156 Gene3D - 1657 2034 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03863 Rops-Chr11 72529122 72539526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03863 500 622 U-box Gene Family AT2G23140 41.935 1.15e-11 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03863 - - gmx:100816765 3770.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00901 2 12689646 12701774 Rops11g03863 11 72529122 72539526 PCT