Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03856 ATGGCTTCTTCAGTGGTGGATACCTGCAAATTGGAGGATATGCAGGTGGACATTGAGAAGAACGCCCAGGATGTAAGGTCTCAGTGGGTGCTTAACACTCCTGAGCCCCCAAGTCCATGGCATGCGGTTGCAAATTCTGTGAGGAAAACCATCTCCAAGTTTCAACAAAGGTTTTCCTCTCTCAGAGATCAACCCTGCACCACACTTGTGCTTTCAGTTTTGCAGAGGATTTTTCCTATTCTTTGCTGGGGCAAAAACTACACTGCAGTTAAATTCAGGAAAGATTTTCTTGCTGGCCTCACTATTGCAAGTCTCTGTATTCCCCAGAGCATTGGGTATGCGACCTTAGCACATCTTGATCCTCAATATGGCCTTTATACAAGTGTCGTACCACCGCTTATCTATGCTGTAATGGGAACTTCAAGAGAGATAGCAATTGGTCCTGTGGCGGTGGTTTCTCTGCTGTTATCTTCGATGATCCAGAAATTAGTAGACCCAGCAGCTGATCCAGTGGGTTATACAAAGCTGATTTTTCTTGCCACTCTCTTTGCTGGTATCTTTCAGACTTCGTTTGGACTCTTCAGGCTGGGGTTCTTAGTGGATTTCCTGTCCCATGCTGCAATTGTCGGATTTGTAGCAGGAGCTGCCATTGTGATTGGGCTTCAACAGTTGAAAGGGCTGTTAGGAATCACTCATTTTACGACCAAAACGGACATAATCTCTGTCTTGAAAGCTGTCTGGGAAGCAGTTCATAATCCCTGGAACCCTCGTAATTTTATCCTGGGATGCTCGTTCTTGATCTTCATCCTAACGACTAGGTTTCTGGTTAAAAGGAAGAAGAAGCTGTTCTGGTTGGCATCAATCTCTCCTCTTCTGTCTGTTATACTGTCAACTCTAATTGTTTTTCTGACACGAGCTGATAAAAATGGAGTTAAAATTGTGAAACACATCAAAGGGGGACTCAATCCAAGCTCCCTCCATCAGTTAGACTTCAACAATCCCAATGTTGGAGAAGTGGCCAAAATTGGACTAGTGGTTGCTGTTGTTGCCCTTACTGAATCTATAGCTGTTGGACGGTCTTTTGCATCCATCAAAGGGTACCAACTTGATGGAAACAAGGAGATGATGTCACTAGGCTTCACAAACATCATAGGATCTCTCACCTCCTGCTATGTTGCAACTGGTTCTTTCTCCCGTACTGCTGTTAATTATGCGGCTGGCTGTGAAACTTTGATATCAAACATTGTGATGGCCATCACCGTTTTGATATCACTGCAGTTTTTGACAAAGCTCTTGTATTATACCCCTACTGCAATTCTTGCTTCAGTGATCCTCTCTGCTCTCCCAGGACTCATAGATATCAGTGAAGCTTACAAAATTTGGAAGGTTGATAAGCTAGACTTTCTTGCTTGCACTGGAGCCTTCTTTGGGGTACTGTTTGGTTCTGTGGAGATTGGTCTGCTAGTGGCGGTGGTAATATCCTTTTCGAAGATCATATTAATTTCAATTCTACCAGGCACCGAAACTCTAGGACAACTTCCTGGAACTGATTTGTTCTGCGATGTCTATCAGTATCCTATGGCAGTTAAGATTCCTGAGGTTGTGATAATACGTATCAAGTCTGCGTTGCTTTGCTTTGCAAATGCCAATTTAGTTAGAGACAGGATCATCAAATGGATCACTCAGGAAGAATCAGAAGATGACAAAGGAAATTCAAGAAACACCATTAAACTCGTTATTCTTGACACCTCGAATTTGGTGAACATTGACACCTCCGGAATTGCTTCTCTGGAGGAACTGCACAAGAGTTTGTCTTCACAAGGGAAGCAGTTAGCCATTGCCAACCCCAGATGGCAAGTGATCCACAAGCTGAAAGTGTCCAACTTTGTCAGCAAAATAGGTGGCAGAGTCTTTCTGACTGTTGAAGAAGCTATTGGCTGCAAGAGTGAGTTATAA 1956 0.4356 MASSVVDTCKLEDMQVDIEKNAQDVRSQWVLNTPEPPSPWHAVANSVRKTISKFQQRFSSLRDQPCTTLVLSVLQRIFPILCWGKNYTAVKFRKDFLAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKLVDPAADPVGYTKLIFLATLFAGIFQTSFGLFRLGFLVDFLSHAAIVGFVAGAAIVIGLQQLKGLLGITHFTTKTDIISVLKAVWEAVHNPWNPRNFILGCSFLIFILTTRFLVKRKKKLFWLASISPLLSVILSTLIVFLTRADKNGVKIVKHIKGGLNPSSLHQLDFNNPNVGEVAKIGLVVAVVALTESIAVGRSFASIKGYQLDGNKEMMSLGFTNIIGSLTSCYVATGSFSRTAVNYAAGCETLISNIVMAITVLISLQFLTKLLYYTPTAILASVILSALPGLIDISEAYKIWKVDKLDFLACTGAFFGVLFGSVEIGLLVAVVISFSKIILISILPGTETLGQLPGTDLFCDVYQYPMAVKIPEVVIIRIKSALLCFANANLVRDRIIKWITQEESEDDKGNSRNTIKLVILDTSNLVNIDTSGIASLEELHKSLSSQGKQLAIANPRWQVIHKLKVSNFVSKIGGRVFLTVEEAIGCKSEL* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03856 651 CDD STAS_SulP_like_sulfate_transporter 525 639 - -
Rops11g03856 651 PANTHER SULFATE TRANSPORTER 60 646 IPR001902 GO:0016020|GO:0055085
Rops11g03856 651 Pfam STAS domain 525 644 IPR002645 -
Rops11g03856 651 SUPERFAMILY SpoIIaa-like 529 645 IPR036513 -
Rops11g03856 651 Pfam Sulfate permease family 92 472 IPR011547 GO:0016020
Rops11g03856 651 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Rops11g03856 651 Gene3D STAS domain 505 649 IPR036513 -
Rops11g03856 651 ProSiteProfiles STAS domain profile. 544 648 IPR002645 -
Rops11g03856 651 NCBIfam sulfate permease 79 641 IPR001902 GO:0016020|GO:0055085
Rops11g03856 651 FunFam Sulfate transporter 31 504 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03856 Rops-Chr11 72461461 72471198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03856 23 645 Inorganic Solute Cotransporters AT5G10180 67.949 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03856 K17469 - gmx:100781327 1139.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03856 11 72461461 72471198 Rops11g03856 11 72461461 72471198 ECH