Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03855 ATGATCGCTTCAGCAACAATGAGTTGCACATCAGGAGAGTCGATGGACCTTGAGAAGAATGGCCGTGACAACAAGGCTCTGTGGGTACTGAATCCTCCAGAGCCACCATGCATGCTAAGTCAAGTCTTGATCAACATCAAGAACACCCTCTTACCTCGTCCAAATCGAACCAGATTCTTTTCTCTCAGGAATCAACCTTCACCCAAAAGCGTGTTTACCTTGTTGCAGGACTTGTTTCCCATCCTTGCTTCATTCCAAAACTACAATGCACATAAGTTCAAGTGCGATTTCTTGGCGGGTCTAACCCTTGCAATCTTCTCCATTCCTCAGGTTTGGTTTTCTGGTGGACTATCTTTCACATGCCACGATTGTGGGGTTCTGGCAGCAGTTGCAGTGGGCATTGGACTGCAACAATTGAAAGGATTATTTGGAATCATTAAGTTTACCAACAAAATTGATTTAATTTCTGTGATGAAAGCTGTTTGGACATCCTTCAAAGACCAAGGGAGAAGGCAAAAGAAACTCTTCTGGTTGTCACACATTGCTCCTCTCCTTTCAATTATTATATCCTCTGCTATTGCATATAAAATAAATGTTCATCAGCTTGAAGTGAAGGACTACAGAGTTGAAGTCTTAGGACCAATCAAAGGAAGTAGCTTGAATCCAAGCTCATTCTACCAGTTACAATTTGATGGTAAATTCGTGGTTCCTTTGATCAAAATTGGGTTGGCAGTTGCTGTTGTTTCAACCACGGATGCTATTGCTATTGGCCGATTATTTGCATCTTTAAGAGGATACAATCTTGATTCAAACAGAGAAGTGGTATCCTTAGGAATCATGAACATTATTGGATCCTTCACTTCTTGCTACGTTGCATCAGGTTCTATCACACGTACTGCTGTAAATTATAATGCTGGCTCTGAAACAATGGTGTCGAGCATAGTGATGGCACTCACGGTCATGATGTCATTTAAATTTTTGACAAGGCTCTTATATTTCACTCCCAAATCAATCCTAGCAGCAATAATTCTTTCTGCTGTACCAGGACTCATTGACCTTAACAAAGCATATGACATTTGGAAGGTTGACAAAATGAATTTCCTTGCTTGCACAGGAGCTTTCTTTGGGGTGTTGTTTGCATCTGTGGAAATGGGCCTTGCAATTGGGATCACAATATCATTCGCGAAGATAACTGTGATCTCAATTCAACCTGGTATAGTGGTTGTTGGAAGGCTTCCAGGAACGGATGCATTTGGTGACATTGAACAATATCCAATAGCTGTCAACATTCCTGGTGTTTTGATAGTCTCTCTAAATTCTGCTTGGCTTTGTTTTGCAAATGCAAATCTGGATCCGGAAGCTAAGGATGGGAAAGGAGAAAGCACCTTCACACTAGTCATTCTTGATACCTCAAGTCTTGTGAATATTGACACCGCGGGAATTGCTTCCCTAGTGGAACTGAATAAGAATCTGACTTCACATGCAGTGAGGTTAGCCATCGCTAACCCTAGATGGCAAGTAATTCACAAGCTAAGATTAGCTAACTAA 1548 0.4141 MIASATMSCTSGESMDLEKNGRDNKALWVLNPPEPPCMLSQVLINIKNTLLPRPNRTRFFSLRNQPSPKSVFTLLQDLFPILASFQNYNAHKFKCDFLAGLTLAIFSIPQVWFSGGLSFTCHDCGVLAAVAVGIGLQQLKGLFGIIKFTNKIDLISVMKAVWTSFKDQGRRQKKLFWLSHIAPLLSIIISSAIAYKINVHQLEVKDYRVEVLGPIKGSSLNPSSFYQLQFDGKFVVPLIKIGLAVAVVSTTDAIAIGRLFASLRGYNLDSNREVVSLGIMNIIGSFTSCYVASGSITRTAVNYNAGSETMVSSIVMALTVMMSFKFLTRLLYFTPKSILAAIILSAVPGLIDLNKAYDIWKVDKMNFLACTGAFFGVLFASVEMGLAIGITISFAKITVISIQPGIVVVGRLPGTDAFGDIEQYPIAVNIPGVLIVSLNSAWLCFANANLDPEAKDGKGESTFTLVILDTSSLVNIDTAGIASLVELNKNLTSHAVRLAIANPRWQVIHKLRLAN* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03855 515 Pfam STAS domain 424 514 IPR002645 -
Rops11g03855 515 Gene3D STAS domain 403 515 IPR036513 -
Rops11g03855 515 PANTHER SULFATE TRANSPORTER 125 514 IPR001902 GO:0016020|GO:0055085
Rops11g03855 515 Pfam Sulfate permease family 170 371 IPR011547 GO:0016020
Rops11g03855 515 CDD STAS_SulP_like_sulfate_transporter 424 512 - -
Rops11g03855 515 ProSiteProfiles STAS domain profile. 423 515 IPR002645 -
Rops11g03855 515 SUPERFAMILY SpoIIaa-like 429 515 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03855 Rops-Chr11 72448326 72452976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03855 73 515 Inorganic Solute Cotransporters AT5G10180 46.042 2.33e-132 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03855 K17469 - gmx:100817841 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03855 11 72448326 72452976 Rops11g03855 11 72448326 72452976 ECH
Rops11g03855 11 72448326 72452976 Rops10g02279 10 40492224 40493923 ECH