Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03850 ATGAGGCAGCAAAATGTGGTAGTGTCTGAAACCAAATCTGGAGTTTCAGTTTTCCCAACAACTTCACAAAAGCCACCAGCTCCATCAGGAGGGTACATTTCCATTCAAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGTGGACAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCTTCTCCAACCCATCTTAAATCAACACCTTCTTTGGCTGAAGATCATAGTTCTTGGATTCTTCACCACCCATCGGCATTAGACATGTTTGACCAAATTATGGATGCATCAAAGGGAAAGCAAATCGTCATGTTTTTGGACTATGATGGTACACTGTCCCCTATAGTTGATGACCCTGATCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCAAGGTGTTTTCCTACTGCTATAGTGACTGGTAGATGCAAAGACAAGGTATACAGTTTTGTTCGCTTGGCAGAGCTATATTATGCTGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTAGAGCTGTTCTTTTTCAACCTGCCAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAACAATTGGTTGATAAGACAAAATCAACTCCTGGAGCCAAGGTTGAGAACAACAAGTTCTGTCTCTCTGTACATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACACCAAGTGAAATCAGTGTTAAAGGACTATCCGAAGCTTCGCCTTACTCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTCGGAATGGGCAACTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCTGATGAAGATGCGTTCAAGAAATTAAGAGACAGAGGACAAGGCTTTGGTATTCTTGTCTCGAAATTTCCAAAAGACACAAGTGCATCTTACTCTTTACAAGAACCCAGTGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCTCTGCGAGCATGCTCCCGCGTGTAA 1095 0.4219 MRQQNVVVSETKSGVSVFPTTSQKPPAPSGGYISIQRRRVLKNLEINGGQRINAWVESMRASSPTHLKSTPSLAEDHSSWILHHPSALDMFDQIMDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYSFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKARAVLFQPASEFLPMIDEVYQQLVDKTKSTPGAKVENNKFCLSVHFRCVDEKKWSELAHQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGMGNCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPSEVMNFLQRLVEWKHVSLRACSRV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03850 364 FunFam Trehalose 6-phosphate phosphatase 201 360 - -
Rops11g03850 364 FunFam Trehalose 6-phosphate phosphatase 195 271 - -
Rops11g03850 364 FunFam Trehalose 6-phosphate phosphatase 103 190 - -
Rops11g03850 364 NCBIfam HAD-IIB family hydrolase 105 316 IPR006379 -
Rops11g03850 364 NCBIfam trehalose-phosphatase 101 351 IPR003337 GO:0003824|GO:0005992
Rops11g03850 364 Gene3D - 210 360 IPR023214 -
Rops11g03850 364 Gene3D - 103 202 IPR023214 -
Rops11g03850 364 CDD HAD_TPP 104 345 - -
Rops11g03850 364 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 19 358 IPR044651 GO:0004805|GO:0005992
Rops11g03850 364 Pfam Trehalose-phosphatase 106 341 IPR003337 GO:0003824|GO:0005992
Rops11g03850 364 SUPERFAMILY HAD-like 104 353 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03850 Rops-Chr11 72337988 72341054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03850 105 350 Trehalose Biosynthesis Gene Families AT1G60140 28.195 6.96e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03850 K01087 - gmx:100815357 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03850 11 72337988 72341054 Rops11g03850 11 72337988 72341054 ECH