Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03833 ATGTCCAATTCAAACCCGAATTCCTATTCCACGACCCGAAAACTTAACCCGCTGGAAGATCCGAATAGCACCGCCGACCCTCAGGTTCCGCTTCGGAACCTGTCTCTGGTTCGGACGAGGATGGATTCTCTACATCACTTCCTATCGCAATCTATCAACACCAACGCATCTGTCACCGTCGATCAAATCACCGTCGTCTCCAACGAAATCGTCTCTGCCATCCACCAAATCATCATCAACGGCGCCGCCCTCGTATCTCACTCCCAAAACATCACCGTCGCCGGAGCCTCCAAGTCAAAGCAAGTTCTCGGTTCGAAACTCAAGTTCGCAGAAGAAGACGAAGAAAACGACGTCGTCGAAGACAACGACGACGATTGCGAAATCGTGGAACTCGACGCGGTCGAGTTGCTCGCCGAACACATCCATTTCTGCGAGATTTGCGGCAAAGGTTTCCGGCGAGACGCGAATCTCCGCATGCACATGCGCGCGCACGGTAACCAGTTCAAGACGCCGGAAGCGTTGGCGAAACCATTGGAAAATTGCGCAGCCGGAAGCCTCCGTGCAAGGCGATTCTCTTGTCCGTTCGAAGGTTGTAACCGGAACAAGCTTCATCGGAAGTTCAAGCCGTTAAAATCGATCGTTTGCGTGAAGAACCATTTCAAAAGGTGCCACTGCCCTAAGATGTATTCGTGTAACCGTTGCCATAAGAAGAATTTTTCAGTGCTTTCAGATTTGAAGAGCCACATGAGGAACTGTGGAGAGTCTAAATGGAAGTGTTCGTGTGGGTCCACGTTTTCAAGGAAGGACAAGTTGTTTGGACACATAGCACTTTTTGAAGGTCACATGCCTGCTCTTGCTTTGGATGAAGAAGTAGAGAAAGGGAAGCAAGTGGTGGTGAATGAAAGTGAATTGGGTAATTGTTCTATGGATGATGGTTTTTTTGATGATTTTGGTTCCATTGATAACTATTGTTTGGAGGAAGTGTTGGGGTTTCCTGGTAGTTAG 1005 0.4876 MSNSNPNSYSTTRKLNPLEDPNSTADPQVPLRNLSLVRTRMDSLHHFLSQSINTNASVTVDQITVVSNEIVSAIHQIIINGAALVSHSQNITVAGASKSKQVLGSKLKFAEEDEENDVVEDNDDDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPLENCAAGSLRARRFSCPFEGCNRNKLHRKFKPLKSIVCVKNHFKRCHCPKMYSCNRCHKKNFSVLSDLKSHMRNCGESKWKCSCGSTFSRKDKLFGHIALFEGHMPALALDEEVEKGKQVVVNESELGNCSMDDGFFDDFGSIDNYCLEEVLGFPGS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03833 334 SUPERFAMILY beta-beta-alpha zinc fingers 139 165 IPR036236 -
Rops11g03833 334 Gene3D Classic Zinc Finger 142 165 - -
Rops11g03833 334 Gene3D Classic Zinc Finger 216 284 - -
Rops11g03833 334 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 100 IPR044300 GO:0010044|GO:0010447
Rops11g03833 334 FunFam Zinc finger 45-like 139 165 - -
Rops11g03833 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Rops11g03833 334 SMART c2h2final6 229 250 IPR013087 -
Rops11g03833 334 SMART c2h2final6 191 224 IPR013087 -
Rops11g03833 334 SMART c2h2final6 142 164 IPR013087 -
Rops11g03833 334 MobiDBLite consensus disorder prediction 1 29 - -
Rops11g03833 334 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03833 Rops-Chr11 72122085 72123203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03833 114 289 C2H2 Transcription Factor Family AT1G34370 60.221 8.52e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops11g03833 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03833 - - cam:101491258 444.506