Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03830 ATGGCTACTCCAATTGATCCTTTGGAAAAGATTGTTCCTACCAGGGAATGCTGGAGGGTGAAAAGATGTACCATGCATGCCAGTGTCAAAAAGACATTGGTCTACAAGTTTAAGCCATTGCTTGAAGAAGGAAAGGTTTATGTAATGGCTTATTTTGGTGTAGGTGGAAATTCGAGCTTCTTTCGCACCTGTAAACATGAATATCGTCTTAATTTTCAATATAGAACCACCGTTAAGCCTTCTGAAAGTAATGTAATCCCAATTTATGGATTTAAATTTGTTTCTTTTGATGAGATTTTACAGAGTTCTGCTGATTTTCCTTATTTAGTGGATGTTATTGGTGTACTCAAAGCCGTTGGTACAGAGAAGGAATATGTCAAAGATGGAAAAGGAACAAGGATGATTGTTATGGAGCTTGATGTTGATAGTGTCAAGTTAGAAGTTGCTTTATTTGGTGATTATGTGGAGCAACTAAATTCTTTGATAGCTAATTCTGATTCGAATCAAAATGTAGTTGTGATCCAATTTGCTAAGATTAAGAGTTTTAAAGGGAAGATTATGTTGCAAAACGTAATGTTTGGCACTAAGTTGTTGTTCAACCCTGACATTCCAGAGGTTTTAGATCTGAAAAGCAGGCTGCCAGTTTCAAGTGGTGAGGTCTCTCAGGGGTTAAGTGTCCTATCTGATTCTCCACGTTACTCTATGGAGGAGGATTTCCTTGAAATAACTCAAAACAAATCCATAGAGGAACTAAAAGATTGCAAAGATCCTGGATTCTATGCTGTTTTAGCTACTATCAACTGTATTATCAATGGTCCAGATTGGTGGTATACAGCTTGCAAGTGCAACAAAGCTGTCCATCCAGATTCTGGAATGTACTACTGTGAAAGGTATCGAATCAAAATGAGGGTTGTCGATGACACTGATAGTGCCACATTTGTAGTCTGGGATAGGGATGGCACTATGCTGCTTAAAAAGACATGCTCCCAATTGCTTGAGTCTGTTAAGAATGTGGGTGGTCCAATTTCTCATCCTTCTGAATTTGATGACTTCCTTATTGGCAAGGAATTTTTGTTTAAGGTTGAAGTTAACCCAGTAATCAGCTCAGAATTTCAACCTTCATTTAAGGTTGTCAAAGTCTGTACTGATCAAACTATTATAAACAAATTTAGAAAAATTTCTGCTTTCACCCTGGTTAATGAGCCTGACATGACTGCAGGTATCTCTTTTGGAGATACATCTTTGAGTCTTGAATTGCAAGAAGTGCAATCTACTTGCTGCAAGGATGTACTGCATGTTTCAGCTGAACAAGAAATTTACCTCAGTTCTCAGGCTGACAATTCAGAACCTTTATTGACTCCCAACAAAAGGCCTCTTGAAGACTTGGATGAGATTGCTGATGGGGACATGTCTACCACCAAGTTGAAAGAAATTAAAAAGGAACCGGAAGATTGA 1455 0.3808 MATPIDPLEKIVPTRECWRVKRCTMHASVKKTLVYKFKPLLEEGKVYVMAYFGVGGNSSFFRTCKHEYRLNFQYRTTVKPSESNVIPIYGFKFVSFDEILQSSADFPYLVDVIGVLKAVGTEKEYVKDGKGTRMIVMELDVDSVKLEVALFGDYVEQLNSLIANSDSNQNVVVIQFAKIKSFKGKIMLQNVMFGTKLLFNPDIPEVLDLKSRLPVSSGEVSQGLSVLSDSPRYSMEEDFLEITQNKSIEELKDCKDPGFYAVLATINCIINGPDWWYTACKCNKAVHPDSGMYYCERYRIKMRVVDDTDSATFVVWDRDGTMLLKKTCSQLLESVKNVGGPISHPSEFDDFLIGKEFLFKVEVNPVISSEFQPSFKVVKVCTDQTIINKFRKISAFTLVNEPDMTAGISFGDTSLSLELQEVQSTCCKDVLHVSAEQEIYLSSQADNSEPLLTPNKRPLEDLDEIADGDMSTTKLKEIKKEPED* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03830 484 CDD RPA1_DBD_B_like 111 214 - -
Rops11g03830 484 MobiDBLite consensus disorder prediction 445 484 - -
Rops11g03830 484 SUPERFAMILY Nucleic acid-binding proteins 246 380 IPR012340 -
Rops11g03830 484 Pfam Domain of unknown function DUF223 24 105 IPR003871 -
Rops11g03830 484 Gene3D - 229 393 IPR012340 -
Rops11g03830 484 Gene3D - 12 83 IPR012340 -
Rops11g03830 484 CDD RPA1_DBD_C 248 380 IPR047192 -
Rops11g03830 484 SUPERFAMILY Nucleic acid-binding proteins 24 82 IPR012340 -
Rops11g03830 484 MobiDBLite consensus disorder prediction 456 484 - -
Rops11g03830 484 SUPERFAMILY Nucleic acid-binding proteins 91 215 IPR012340 -
Rops11g03830 484 PANTHER OS03G0429900 PROTEIN 133 383 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Rops11g03830 484 Gene3D - 85 218 IPR012340 -
Rops11g03830 484 CDD RPA1_DBD_A_like 25 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03830 Rops-Chr11 72071833 72074536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03830 25 308 Core DNA Replication Machinery Family AT5G08020 27.564 2.39e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03830 - - vun:114187234 337.035