Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03823 ATGTATTCCACGGCTGTTGTACCCTTTGGTAGTACATCAGCTACTCAATGGGGAATTCGTTCTCAGCTTATTGCGAAATCCAGTACCATGGGCAAGATTGCATCTTCCACCCACAATGTCACAAGCAGGATAAGCTTTGTGGCTGCCCGAAGTTCAAGCTTTTTCTCTCGGGATTCCTTGCATGCACTGTTTGACATAGGTTCATATCAAACTTTGCATCGTCACAGGGGATCAAGGTTGACAGTTAGAGCAGAAAAAGATTACTATTCCGTCCTTGGGGTGTCCAAAAATTCTACTAAATCTGAAATTAAGAGTGCTTACCGGAAGCTTGCCCGGAATTATCATCCAGATGTGAACAAAGACCCTGGTGCAGAAGAGAAATTCAAGGAAATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCCATATATGATAGGTATGGAGAGGCTGGCCTTAAAGGTTCAGGAATGGACATGGGGGATTTCAGCAGTCCTTTTGATCTGTTTGAGACACTGTTTGAGGGAATGGGAGGCATGAACAGCAGAGGTTCTTGGAATGGAGCAATTGATGGTGAAGATGAGTATTACAGTCTTCTTTTGAACTTTAAAGAAGCCGTTTTTGGAGTGGAAAAGGAGATAGAGGTTAGGCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCCGGGACTAAATCATCTAGATGTAGCACTTGTGGTGGTCAGGGTCGGGTTGTCGCATCAACAAGGACTCCATTAGGTATCTTTCAGCAGTCTATGACCTGCTCTTCTTGCAATGGAACTGGAGAAACTTCAACACCTTGCAATACATGTTCTGGAGATGGTCGTGTGAGGAGAACAAAGCGGATAAGTCTCAAGGTTCCAGCTGGTGTGGATTCTGGTAGCCGTCTAAGGGTCCGAAATGAAGGTAATGCTGGAAGGCGCGGTGGTTCTCCTGGTGATCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCTATGCTTAAAAGAGAAGACAATAACATTTTATACGCTTGTAAGGTGTCTTATATTGATGCAATCTTGGGGACTACTATTAAGGTTCCTACTGTAGATGGCATGGTGGACTTAAAAATCCCAGCTGGGACTCAACCAGGCTCAACACTTGTTATGGCTAAGAAAGGTGTTCCCGTGCTGAATAAAAAGAATATGAGGGGTGATCAATTGGTTCGAGTGCAAGTTGAAATCCCTAAAAGATTGAGCAGCAATGAGAGAAAACTTATTGAGGAACTCGCTGATTTAAGCAAAGGCAAGGTTGCCACCGGTAAGAGATAA 1326 0.4382 MYSTAVVPFGSTSATQWGIRSQLIAKSSTMGKIASSTHNVTSRISFVAARSSSFFSRDSLHALFDIGSYQTLHRHRGSRLTVRAEKDYYSVLGVSKNSTKSEIKSAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGMDMGDFSSPFDLFETLFEGMGGMNSRGSWNGAIDGEDEYYSLLLNFKEAVFGVEKEIEVRRLESCGTCNGSGAKPGTKSSRCSTCGGQGRVVASTRTPLGIFQQSMTCSSCNGTGETSTPCNTCSGDGRVRRTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVLEVIPDPMLKREDNNILYACKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPGSTLVMAKKGVPVLNKKNMRGDQLVRVQVEIPKRLSSNERKLIEELADLSKGKVATGKR* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03823 441 Gene3D - 224 287 - -
Rops11g03823 441 CDD DnaJ_C 195 417 - -
Rops11g03823 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 211 290 IPR036410 -
Rops11g03823 441 Gene3D - 194 329 - -
Rops11g03823 441 Pfam DnaJ domain 87 148 IPR001623 -
Rops11g03823 441 SUPERFAMILY Chaperone J-domain 83 184 IPR036869 -
Rops11g03823 441 SMART dnaj_3 86 143 IPR001623 -
Rops11g03823 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 44 437 - -
Rops11g03823 441 Gene3D - 334 440 - -
Rops11g03823 441 Hamap Chaperone protein DnaJ [dnaJ]. 84 439 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Rops11g03823 441 Gene3D DnaJ domain 83 187 IPR036869 -
Rops11g03823 441 FunFam Molecular chaperone DnaJ 216 292 - -
Rops11g03823 441 FunFam Chaperone protein dnaJ A6 chloroplastic 84 187 - -
Rops11g03823 441 PRINTS DnaJ domain signature 123 143 IPR001623 -
Rops11g03823 441 PRINTS DnaJ domain signature 107 122 IPR001623 -
Rops11g03823 441 PRINTS DnaJ domain signature 89 107 IPR001623 -
Rops11g03823 441 PRINTS DnaJ domain signature 143 162 IPR001623 -
Rops11g03823 441 Pfam DnaJ central domain 224 287 IPR001305 GO:0031072|GO:0051082
Rops11g03823 441 NCBIfam molecular chaperone DnaJ 87 430 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Rops11g03823 441 CDD DnaJ_zf 224 287 IPR001305 GO:0031072|GO:0051082
Rops11g03823 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 339 425 IPR008971 GO:0006457|GO:0051082
Rops11g03823 441 FunFam Chaperone protein dnaJ 1, mitochondrial 334 441 - -
Rops11g03823 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 192 347 IPR008971 GO:0006457|GO:0051082
Rops11g03823 441 ProSiteProfiles dnaJ domain profile. 87 151 IPR001623 -
Rops11g03823 441 ProSitePatterns Nt-dnaJ domain signature. 128 147 IPR018253 -
Rops11g03823 441 ProSiteProfiles Zinc finger CR-type profile. 211 292 IPR001305 GO:0031072|GO:0051082
Rops11g03823 441 CDD DnaJ 87 140 IPR001623 -
Rops11g03823 441 FunFam Putative Mitochondrial DnaJ chaperone 276 329 - -
Rops11g03823 441 Pfam DnaJ C terminal domain 199 414 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03823 Rops-Chr11 71983938 71987972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03823 88 150 C2H2 Transcription Factor Family AT1G74250 46.377 1.11e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03823 K03686 - gmx:100786143 751.51