Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03818 ATGGAGGAGGAAGAGCATGAGGTTTACGGCGGTGAGATCCCCGACGTCGGTGAGATCGAAGGAGACATCGATTCTCACCATGACCACGCCGACGTTGACATGTCCTCCGCCGATGACGACGCCGTCAAGGAACTTGACGAGATGAAGAAGCGTTTGAAGGAAATGGAAGAAGAAGCCGCGGCACTTCGTGAAATGCAAGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTAGTGCAGCTGCTTCACAGGCCAACAAGGAGGTGGCAGATTCTCGATCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAATCATGTGGTACAGTGAACAGGGTTACTATCCTGACAGACAAGTTTGGCCAACCTAAAGGTTTTGCTTATGTGGAATTCCTTGAAACTGAAGCTGTTCAAGAGGCTCTTCTATTGAATGAATCCGAGTTACATGGCCGTCAATTGAAGGTTATGCCTAAGAGGACCAACGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTCTAATCCTTACATGGGGTACCGCTTCAGGAGGCCATATCCTCCTCCTTACTTTTACTCCCCTTATGGATATGGAAAGTTTCCCAGGTTTAGGAGGCCAGGTCGTGTTCTATGTTATGGAGTAGTATCTATTGCCCAATTGTGTCATTGGGCTCTGTTACTGGCCTTGTATGTTTCGTCTTCAGTTCTTGGAAGATAG 747 0.4779 MEEEEHEVYGGEIPDVGEIEGDIDSHHDHADVDMSSADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQANKEVADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLETEAVQEALLLNESELHGRQLKVMPKRTNVPGMKQYRPRRSNPYMGYRFRRPYPPPYFYSPYGYGKFPRFRRPGRVLCYGVVSIAQLCHWALLLALYVSSSVLGR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03818 248 MobiDBLite consensus disorder prediction 19 38 - -
Rops11g03818 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Rops11g03818 248 Coils Coil 38 72 - -
Rops11g03818 248 SMART rrm1_1 96 167 IPR000504 GO:0003723
Rops11g03818 248 MobiDBLite consensus disorder prediction 1 38 - -
Rops11g03818 248 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 33 182 - -
Rops11g03818 248 Gene3D - 21 178 IPR012677 -
Rops11g03818 248 SUPERFAMILY RNA-binding domain, RBD 85 194 IPR035979 GO:0003676
Rops11g03818 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
Rops11g03818 248 FunFam Polyadenylate-binding protein 1 34 167 - -
Rops11g03818 248 CDD RRM_II_PABPs 96 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03818 Rops-Chr11 71953828 71956458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03818 89 166 Eukaryotic Initiation Factors Gene Family AT2G36660 34.177 1.64e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03818 K14396 - jre:109014561 318.546