Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03809 ATGATTGGTTTGATGGGTGAAGAGCGAGAAGAAGTGGTGAGAAAGAAGGAAAATGAGGGTGTTAATGGTGATAAGTGGTGGTACTTGTTCTGTGGCTTGCAGTGTTGTAAAAGTTGGTGCTGTTTAAGACATGAGAATTCCTTTTCAATGATCCCTTCTTTACTCATGAAGAGACTCAGCAGCTCAGATTCTTCAGGTGCTCTCATCACAATCTGTCCATCAACAGACGAACACAGTCCGAGGAACAACCCTATGTATGGTAGGGAGTTCCAATCGATGTTGGAAGGACTTGATGAGGAAGGGTGTATTGAAGAACCGGGGCATCACTCAAAGAAACGTAGACTAAGTGTGGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTAGAAAACAAGCTTGAACCTGAGAGGAAGGTTAAGCTTGCTCAAGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACCGTAGAGCAAGATGGAAAACCAAGCAATTGGAGAGAGATTACGGTGTTCTCAAAGCTAATTATGAAGCTCTTAAGCTTAACTTTGATGCCCTCAAACATGGCAACGAAGCTTTACACAAGGAGATTAATGAATTGAAATCAAGGTTGCAAGAAGAGAATACTGCAACCGGTGTTTCTGTGAAAGAAGAGATAACGATGCCTGACTCAGAAGACAAAATGCTTGAACCAAGTAAGAGTAAACCATCTTCTGAAACCTCAATTCCAGGTTCAGAATCCAAGGATCAATTGAATTATGATTGCTTCAACAACAACGATGATGTCGGAGCCGTTTCACTCTTCCCATTAGACTTCAAAGACGGTTCTTCTGATAGCGACTCTAGCGCAATCTTGAACGATGACAACAGTCCCAAAACAGCAATTTCTTCATCTGGGGTTCTTCAAAGTCATCATATTTTGTTGTCTCCTGAGTCTTCTCCATTGAAATTCAATTGCTTCCAGTACCAGAAATCGTATCATGCACAGTATGTGAAGATGGAGGAGCACAATTTCTTAAGCGCAGATGAGGCTTGCAATTTCTTCTCTGATGAACAAGCACCGACCCTTCAATGGTACTGTCCAGATCAGTGGAATTGA 1107 0.4219 MIGLMGEEREEVVRKKENEGVNGDKWWYLFCGLQCCKSWCCLRHENSFSMIPSLLMKRLSSSDSSGALITICPSTDEHSPRNNPMYGREFQSMLEGLDEEGCIEEPGHHSKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNFDALKHGNEALHKEINELKSRLQEENTATGVSVKEEITMPDSEDKMLEPSKSKPSSETSIPGSESKDQLNYDCFNNNDDVGAVSLFPLDFKDGSSDSDSSAILNDDNSPKTAISSSGVLQSHHILLSPESSPLKFNCFQYQKSYHAQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03809 368 SMART HOX_1 109 170 IPR001356 GO:0003677
Rops11g03809 368 MobiDBLite consensus disorder prediction 222 236 - -
Rops11g03809 368 Pfam Homeobox associated leucine zipper 166 208 IPR003106 GO:0006355|GO:0043565
Rops11g03809 368 MobiDBLite consensus disorder prediction 237 253 - -
Rops11g03809 368 SUPERFAMILY Homeodomain-like 105 168 IPR009057 -
Rops11g03809 368 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
Rops11g03809 368 FunFam Homeobox-leucine zipper protein HAT5 104 168 - -
Rops11g03809 368 CDD homeodomain 111 167 IPR001356 GO:0003677
Rops11g03809 368 Pfam Homeodomain 111 164 IPR001356 GO:0003677
Rops11g03809 368 Coils Coil 165 213 - -
Rops11g03809 368 PRINTS Lambda-repressor HTH signature 146 162 IPR000047 GO:0003677
Rops11g03809 368 PRINTS Lambda-repressor HTH signature 137 146 IPR000047 GO:0003677
Rops11g03809 368 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Rops11g03809 368 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 104 329 IPR045224 GO:0003700
Rops11g03809 368 Gene3D - 107 173 - -
Rops11g03809 368 MobiDBLite consensus disorder prediction 207 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03809 Rops-Chr11 71768123 71770297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03809 55 368 Homeobox Transcription Factor Family AT2G22430 48.378 1.67e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops11g03809 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03809 K09338 - qsu:112039557 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00964 2 13537448 13539726 Rops11g03809 11 71768123 71770297 PCT