Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03808 ATGAAGAAAACTTTTCCCCCCAATTACAACGTTAACCGTTGCGGTTCCAATTTCCACCGTCAACCACCGCACGGTGGTTTGGCTTCTCGTCCCGTTCACAATTCCTACTATCGCCGGAAGCCCGGATACCAAACCAACCACCGTCATGACCGTCCTCCGGAGCCCAATTTCGTCATCGAACTCCTTCTTAACCGCCGCGCCCTCCGCCGTGAGGAAGTCGAGGCTTTGATCGATAAATGCATACCAAAACCGGATAATTTTTCTTTCTACCCCGGCGACGGTGTCGGCGCCTTACTCAATTTCCGACAATCGACGGAAGCTCGCGACGCCTTCGTTTGGTTATGGAAATCGCGTTTCTCCGAGGTTCATGATTTTACTCCGCAACTCATAAACGTTCTCTCGCCTTGTGACAGGGACGATCTTGAAGCTCGCCTCCGGAAGCTCTTCTCGAGCCACGTGAAGTGGTTGATGGAAGGGAAGGAGGTGAACCGTTGGGTGGCGGAGATTCAACGTTTATCGAACGATATTGCGAATGTTTCAAGATTGTTGCGTAGGCCTTTGCAACTTGGCTTATATGAGAAGCAACTGCAGAAGAAAAAAGGGCTTGAAACCGAGAAGGGATTGATTGAAAGGAGATTAAACGAGTTTCAGTCTGCGATGGAGTGCATATTGAAGTATCTTGAGGAGAATGATGTGGAGGATGGTCTTCCCGTTTTTAGGTTCGGTGATGGTTTGGATTGGAAGCGGCTTCATTGCCTTATCATCAGGGAGCTTCGCAGACTCGAAGAAGGGTTACCCATCTATGGTTTCAGGAGGGAAATTCTTCAGGAAATTCATCAACAACAGATAATGGTGTTGATTGGAGAGACCGGTTCTGGAAAGAGTACACAGTTGGTACAGTTTCTTGCTGATTCAGGCATTGGTACTGATGAGTCCATTGTATGCACTCAGCCTCGCAAGATTGCTGCCAAAACATTGGCTCAAAGGGTCCAGGAAGAAAGCAGGGGATGTTATGAAGACAATTCAATCAAGTGTTATTCTACATTCTCATCCTCGCATGAGTTTGATTCCAGGATAGCATTCATGACAGATCACTGTTTATTGCAGCACTACATGTGTGATAAAAATTTGTCTGGGATCTCGTGTATCGTGATTGATGAGGCTCATGAAAGGAGCCTAAATACTGATCTCCTGCTGTCATTGATAAAGAATTTACTTTGTAGGAGGGTCGAAATGCGGCTTATCATTATGTCTGCTACGGCTGATGCAAAGCAGCTATCTGATTACTTCTATGGTTGTGGAATTTTTCATGTGCTTGGGAGAAAATTTCCTGTGGAGGTGAGATATGTTCCTTCTGATTACACAGGACATTCTGGTTCTACTGCTGTGGCCCCATATGTTTTTAATGTTGTCAGAATGGCGACTGAGATTCACAAAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCACAGATAGAAGTAGAATGGGCGTGTGAAAAGTTTGAAGCTCTCTCTGCAGTTGCCTTGCCTTTACATGGAAAACTTTCATCTGAAGAGCAATTTCATGTTTTCCAGAACTACCCTGGAAAAAGAAAAGTGATATTTTCCACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTCATAGATTCGGGGTTGGTTAAAGACAGTCGATTTGATCCTGGAAGTGGTATGAATGTACTTAAGGTTGGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGCAAGTGCTACAGGCTGTACTCTGAAGCTGATTATCAGTCTATGGAGCTAAATCAAGAACCTGAGATTCGAAGAGTTCATCTTGGTGTAGCTGTTTTGAGGATCCTTGCTTTAGGAGTGAGGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTCCCAGCTCTATCGAAATGGCAATCAGGAACCTAATTCAATTAGGAGTCATTATACTGAACAATAATGTTCATGAATTAACTTTTGAAGGTAGGCACTTGGTAAGAATGGGGATCGAGCCTAGGCTTGGTATACTCATTCTTGGCTGTTTCAAACATGGTTTGGGTAGAGAAGGCATTGTCCTTGCTGCTGTGATGGCCAATGCTAGTAACATATTTTGCAGAGTTGGTAATGAAGGTGACAAACAAAGATCTGATTGCCTCAAAGTGCAATTTTGCCATTGTGATGGTGATCTCTTTACTCTTCTTTCTGTGTACAAGGAATGGGAAGCTTTGCCTAGAGAAAGGAAGAACAAATGGTGCTGGGAAAACAGCATCAATGCCAAATCAATGAGGAGATGCCAAGACACAATTTTGGAGTTAGAATCTTGCCTTGAGCGTGAACATGGCTTGGTTACTCCGAGTTACTGGCGTTGGGACCCTTGTATGCCCTCTGAACATGATCAGAATATGAAAAGGGCCATTCTGTCCTCACTTGCTGACAACGTAGCCATGTACTCTGGATGCAATCAACTTGGCTATGAAGTGGCACAAACTGGGAAACATGTCCAACTACATCCATCTTGTTCACTGCTCGTATTTGCTCAGAAACCTAGTTGGGTGGTTTTTTGCGAGCTTCTCTCAGTTTCTAATGAATATTTGGTCTGTGTAAGTGCTTTTGACTTTCAATTGTTACACAACCTTTGCCCTCCTCCCTTGTTTCATGTATCCAAGATGGAAGAGCGGAGATTGCAAAAGAGGGCGTTGACTGGTTTTGGTCCTATTCTTCTCAAGAGATTTTGTGGGAAAGCCAACAGTAATTTGCTTGGTCTTGTTTCGCGTATAAGGAAAGCTTGTATGGATGAACATATTTTCATTGAAGTGAATGTCGACCAGAATGACATCCAGTTATATGCCACTTCACGTGATATGAACACAGCCCTTAGGTTGGTTAATGATGCTTTGGAATATGAGAAAAAGTTGTTACATACTGAATGTATGGAAAAATGTTTGTATCACGGGTCTGGTTTCTCACCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAATGTTCCTTGAGTGTTGATGTGTATCACCCAAACATAAATGCATTTGATGACAAGGAGCTCTGGATGTTTTTTGAGAAAAATGCCTCAGGTTCTATCTGTGCGGTGCACAAGTTTGCTGGCACAGCAAAGGATGTTGAAGATAGAGAAAAGTGGCGCAAGATAACATTTCTGTCCCCTGATGCTGCCAAAAGAGCTGCTGAGCTGGATGGAGAGGAGTTCTGTGGCTCATCGTTGAAAGTTGTTCCCTCGCAGTCAGCTATGGGAGGGGATAAAACATTTTCCTTTCCCGCTGTTAAAGCAAAAATTTATTGGCCTCGTAGGCTTAGCAAGGGATTTGCTATAGTTAAATGTGATATAAAGGATGTTCAATTCATCTTGAGAGATTTTTATAACCTTGCTATTGGAGGACGGTATGTTCGATGTGCAACTGGCAATAAGTCTATGGATAGTATTGTGATAAATGGGCTTGACAAAGAGCTCTCGGAAACTGAAATTTTGGAGGTACTAAAAACTGCTACAAGTAGAAGGATTCTGGATTTTTTCTTGGTGAGAGGAGAGGCTGTTGGAAATCCACCATGCAGTGCCTGTGAAGAGGCACTCCTAAAAGAAATTTCCCCTTTAATGCCCAAAAAAAACCCCTGCATCAGTTCTTGTCGAGTTCAGGTGTTTCCACCTGAGCCAAAGGATGTTTTCATGAGAGCTTTAATCACTTTTGATGGAAGATTACATTTAGAGGCAGCACAAGCTTTGGAGCAAATCGAAGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTGTCAGCAGTTGTTTCATAGCTCCTTGACATTTCCAAGTCCAGTGTATCGTGTGATTAAGGAACAACTGGAAAAAGTACTTGCAAGGTCCAACAATTTGAAGGGTCTTGAGTGGAAACTAGACAGAAATCCTAATGGTTCTTTCCGAGTGAGGATAACAGCAAATGCCACAAAGACAATTGCAGAATTTAGGAGACCTCTGGAAGAACTATCCAGAGGGAAAACCATTGAGCACGACAGCCTCACCCCTACCGTTCTACAGCTCATGTTGTCTAGAGAAGGCTTTAGTCTTAAAAACTCAATACAGCAAGAGACGGGAACTTATATTCTTTTTGACAGGTACAACCTGAATTTACGGATATTTGGTTCCCCGAACCAGATTGCTTTGGCTCAGCAGAAGGTGATTCAATCCCTGCTATCTCTCCATGAAGGAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGTTCTACCTCCTGACTTAATGAAGCAAGTAGTTAAGAATTTTGGGCCAGATCTCCATGGACTAAAGGAGAAGGTACCTGGAGCTAATCTTACACTCAACACACGCCGCCAGATAATCTTTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATCATTTCTGAGATTGCACGTTCAGGCTATCAATTGGTTGAGCGACTTGATACTGGACCTAGTTGCCCGATTTGCTTGTGTGAGGTTGAGGATGGTTACCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTCTGGTGGAGCAATGTGAATCTGCTATCAGAAACAAAGATAGTTTCCCATTATGTTGTTCTCATGGGGGCTGTGGAGATCCTATTCTGCTTACAGATTTGAGATCTCTCTTGTTAAATGATAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCATCGAGCGGGGGAACTTATAGGTTTTGCCCGTCTGCTGACTGCCCCTCAATTTATCGAGTTGCAGATCCAGAGACAGCTGGTGAGCCATTTGTTTGTGGGGCATGTTATTCGGAGACATGCACCAGGTGCCACTCAGAGTATCATCCATACATTTCGTGCGAGAAATATCAAGAATTTAAGGAAGATCCAGACTCATCTCTGAAGGAGTGGTCCAAAGGGAAAGAACAAGTCAAGAGCTGCCCGGGGTGTGGGTATGTAATTGAGAAGGTGGATGGGTGCAACCACGTGGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGCTTGGAGTTCTATATGACAAGTAATGAATGTTATGACCATCTGAGAAATATACACATGGCCCTCTAA 5193 0.4385 MKKTFPPNYNVNRCGSNFHRQPPHGGLASRPVHNSYYRRKPGYQTNHRHDRPPEPNFVIELLLNRRALRREEVEALIDKCIPKPDNFSFYPGDGVGALLNFRQSTEARDAFVWLWKSRFSEVHDFTPQLINVLSPCDRDDLEARLRKLFSSHVKWLMEGKEVNRWVAEIQRLSNDIANVSRLLRRPLQLGLYEKQLQKKKGLETEKGLIERRLNEFQSAMECILKYLEENDVEDGLPVFRFGDGLDWKRLHCLIIRELRRLEEGLPIYGFRREILQEIHQQQIMVLIGETGSGKSTQLVQFLADSGIGTDESIVCTQPRKIAAKTLAQRVQEESRGCYEDNSIKCYSTFSSSHEFDSRIAFMTDHCLLQHYMCDKNLSGISCIVIDEAHERSLNTDLLLSLIKNLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFHVLGRKFPVEVRYVPSDYTGHSGSTAVAPYVFNVVRMATEIHKTEKEGTILAFLTSQIEVEWACEKFEALSAVALPLHGKLSSEEQFHVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPGSGMNVLKVGWISQSSADQRAGRAGRTEPGKCYRLYSEADYQSMELNQEPEIRRVHLGVAVLRILALGVRNVQDFDFVDAPSPSSIEMAIRNLIQLGVIILNNNVHELTFEGRHLVRMGIEPRLGILILGCFKHGLGREGIVLAAVMANASNIFCRVGNEGDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCQDTILELESCLEREHGLVTPSYWRWDPCMPSEHDQNMKRAILSSLADNVAMYSGCNQLGYEVAQTGKHVQLHPSCSLLVFAQKPSWVVFCELLSVSNEYLVCVSAFDFQLLHNLCPPPLFHVSKMEERRLQKRALTGFGPILLKRFCGKANSNLLGLVSRIRKACMDEHIFIEVNVDQNDIQLYATSRDMNTALRLVNDALEYEKKLLHTECMEKCLYHGSGFSPPVALFGSGAEIKHLELEKCSLSVDVYHPNINAFDDKELWMFFEKNASGSICAVHKFAGTAKDVEDREKWRKITFLSPDAAKRAAELDGEEFCGSSLKVVPSQSAMGGDKTFSFPAVKAKIYWPRRLSKGFAIVKCDIKDVQFILRDFYNLAIGGRYVRCATGNKSMDSIVINGLDKELSETEILEVLKTATSRRILDFFLVRGEAVGNPPCSACEEALLKEISPLMPKKNPCISSCRVQVFPPEPKDVFMRALITFDGRLHLEAAQALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPSPVYRVIKEQLEKVLARSNNLKGLEWKLDRNPNGSFRVRITANATKTIAEFRRPLEELSRGKTIEHDSLTPTVLQLMLSREGFSLKNSIQQETGTYILFDRYNLNLRIFGSPNQIALAQQKVIQSLLSLHEGKQLEIHLRGRVLPPDLMKQVVKNFGPDLHGLKEKVPGANLTLNTRRQIIFLHGNKELKPRVEEIISEIARSGYQLVERLDTGPSCPICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIRNKDSFPLCCSHGGCGDPILLTDLRSLLLNDKLEELFRASLGAFVASSGGTYRFCPSADCPSIYRVADPETAGEPFVCGACYSETCTRCHSEYHPYISCEKYQEFKEDPDSSLKEWSKGKEQVKSCPGCGYVIEKVDGCNHVECKCGKHVCWVCLEFYMTSNECYDHLRNIHMAL* 1731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03808 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1519 1598 IPR013083 -
Rops11g03808 1730 SUPERFAMILY RING/U-box 1605 1660 - -
Rops11g03808 1730 ProSitePatterns Zinc finger C2H2 type domain signature. 1706 1727 IPR013087 -
Rops11g03808 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 275 439 IPR014001 -
Rops11g03808 1730 ProSitePatterns Zinc finger RING-type signature. 1538 1547 IPR017907 -
Rops11g03808 1730 SMART ibrneu5 1589 1654 IPR002867 GO:0008270
Rops11g03808 1730 SMART ibrneu5 1655 1719 IPR002867 GO:0008270
Rops11g03808 1730 SMART ultradead3 263 448 IPR014001 -
Rops11g03808 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1517 1599 - -
Rops11g03808 1730 Pfam Helicase conserved C-terminal domain 477 594 IPR001650 -
Rops11g03808 1730 Pfam Helicase associated domain (HA2) 656 750 IPR007502 GO:0004386
Rops11g03808 1730 PANTHER ATP-DEPENDENT RNA HELICASE 256 902 - -
Rops11g03808 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 248 441 - -
Rops11g03808 1730 Pfam IBR domain, a half RING-finger domain 1598 1654 IPR002867 GO:0008270
Rops11g03808 1730 Pfam IBR domain, a half RING-finger domain 1667 1713 IPR002867 GO:0008270
Rops11g03808 1730 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 820 897 IPR011709 -
Rops11g03808 1730 Pfam DEAD/DEAH box helicase 272 426 IPR011545 GO:0003676|GO:0005524
Rops11g03808 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1650 1728 - -
Rops11g03808 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 442 614 - -
Rops11g03808 1730 ProSiteProfiles Zinc finger RING-type profile. 1522 1564 IPR001841 -
Rops11g03808 1730 Gene3D - 1650 1729 - -
Rops11g03808 1730 Gene3D - 254 441 IPR027417 -
Rops11g03808 1730 SMART ha2_5 655 751 IPR007502 GO:0004386
Rops11g03808 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 469 635 IPR001650 -
Rops11g03808 1730 FunFam RBR-type E3 ubiquitin transferase 638 744 - -
Rops11g03808 1730 MobiDBLite consensus disorder prediction 12 52 - -
Rops11g03808 1730 ProSiteProfiles TRIAD supradomain profile. 1518 1730 IPR044066 -
Rops11g03808 1730 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 617 660 - -
Rops11g03808 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 772 IPR027417 -
Rops11g03808 1730 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 381 390 IPR002464 -
Rops11g03808 1730 Gene3D - 442 614 IPR027417 -
Rops11g03808 1730 CDD Rcat_RBR_DEAH12-like 1677 1727 - -
Rops11g03808 1730 SUPERFAMILY RING/U-box 1521 1586 - -
Rops11g03808 1730 Gene3D - 617 660 IPR042035 -
Rops11g03808 1730 CDD DEXHc_RHA-like 282 438 - -
Rops11g03808 1730 CDD BRcat_RBR 1606 1657 - -
Rops11g03808 1730 SUPERFAMILY RING/U-box 1676 1723 - -
Rops11g03808 1730 CDD SF2_C_RHA 443 603 - -
Rops11g03808 1730 SMART helicmild6 497 595 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03808 Rops-Chr11 71721982 71729123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03808 1537 1713 C3H Transcription Factor Family AT2G31770 28.723 5.63e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03808 K12818 - gmx:100810008 2769.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03808 11 71721982 71729123 Rops11g03808 11 71721982 71729123 ECH