Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03804 ATGGAATGGGCCCACTTGCTCTTCCTAGTTGTGTCTCTGCTCCATTCATGTGCATATGCACAAGCAGGCATAATATCAACCCCTTCATTGGGATTCACTTTAAGGGATGATAACTTGAAGGAAACAATGAGTGTTATGTTGGTGGCTTTCTTCTCTGCTTTTATCTTCATGGGTTTCTTTTCCCTCTACCTCCGCCATTGCACCCACGGTTCCGGTGCCAACCGCAACCCTATCGCCGCCGCATCTGACCTCTGCAGCGGTGGTTGCAACCGCCAAATCATTGACAAGTGCCCTGTCCTTGTTTACTCCACCGTGAAGGATCTCAAAATAGGGAAAGGTAACCTCGAATGTGCCGTGTGCTTGAACGAGTTTCAAGACTATGACAATTTAAGGTTGCTTCCAAAATGCCACCATGTGTTCCACCTAGATTGTATCGATACTTGGTTACTCTCTCACATGAATTGTCCCGTTTGTCGCACAAAGTTAACCTCTGATGTTGATGACATTGTCATCACCATCCCAACCACGACACCTGAATTGGAGCAGCAGCAGCAACAACAACAACAACAGATGATAATGGAAGAACCACAGAGTTCAGAGGTAGCAGTGATAACAGGTGAAGAACGTGAACCTGACAGTGCTGTGGTGGAGGAGACAATTATTCCTTCACGCGAATCGAGAATGTTGGATAAGTTCCCGAGGTCACATTCGACGGGTCATTCTTTGGTGGAGGAATCCGAGGAGAACGTTAAGGTTTTGGATAGGTACACTTTGAGGTTGCCAGAACATGTGAGGAAGCAAATTCTCGTGAATCATGGGAAAGTGCTAACCAGTGATGTGGTTATGCCAGGAGCATGGAGTGCTAAGAGAGTATGGTACAGAAGTAACAACAACGTGGAAGGGTGGTCATTGTCCATGACTCCACCTTTGGTTTCACTAGGCTTTGGTTCAGAGAGTGGAAGGACATGCTGGACACCACTTAGGATGTCGTTTCACAGGGTCCAGGGAACTCAAAAATCGTCGCCTATTCCTCCGGTTTGA 1041 0.4697 MEWAHLLFLVVSLLHSCAYAQAGIISTPSLGFTLRDDNLKETMSVMLVAFFSAFIFMGFFSLYLRHCTHGSGANRNPIAAASDLCSGGCNRQIIDKCPVLVYSTVKDLKIGKGNLECAVCLNEFQDYDNLRLLPKCHHVFHLDCIDTWLLSHMNCPVCRTKLTSDVDDIVITIPTTTPELEQQQQQQQQQMIMEEPQSSEVAVITGEEREPDSAVVEETIIPSRESRMLDKFPRSHSTGHSLVEESEENVKVLDRYTLRLPEHVRKQILVNHGKVLTSDVVMPGAWSAKRVWYRSNNNVEGWSLSMTPPLVSLGFGSESGRTCWTPLRMSFHRVQGTQKSSPIPPV* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03804 346 CDD RING-H2_EL5-like 116 159 - -
Rops11g03804 346 ProSiteProfiles Zinc finger RING-type profile. 117 159 IPR001841 -
Rops11g03804 346 SUPERFAMILY RING/U-box 111 165 - -
Rops11g03804 346 FunFam E3 ubiquitin-protein ligase ATL6 78 165 - -
Rops11g03804 346 Pfam Ring finger domain 116 159 IPR001841 -
Rops11g03804 346 SMART ring_2 117 158 IPR001841 -
Rops11g03804 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 168 IPR013083 -
Rops11g03804 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 38 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03804 Rops-Chr11 71699949 71700989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03804 1 308 Rapid Response to Elicitors AT3G05200 35.331 6.31e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03804 K10664 - nnu:104604112 195.282