Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03799 ATGGGTCTCTCAAACTTCCCTTGTGCAGCTGAAGGGGTGTTACCTGTGCTTGTGATGAACACAGTTCTCTCAGTGGCTTTGTTAAAGAACATGTTTAGATCCATGCTCCAAATAGTTGGTGGCACTTCAACAACAACTTCTTCCTCTTATTCTCAAAATGTTGAAGAAGAAGAAGAAGAGGAGTCTCATGAGAGTTCAAGGGAAAGGAGGGTGTCAATAACCCAGTACAAGTCCTTGTGTCACAACAGGTCCAGCATAGCTAGAAGTAGTAGCAGTGGAAGGATGGCTATTGTGGAGTGCTGTGTGTGTCTGTGTGGTTTTGAAGCGAATCAAGAGGTGAGCGAGTTGCCTTGCAAGCATTTCTTCCATAGAGGCTGCTTAGATAAATGGTTTGATAACAAACACACCACTTGCCCTTTGTGTCGTTCCATGGACTAG 438 0.4452 MGLSNFPCAAEGVLPVLVMNTVLSVALLKNMFRSMLQIVGGTSTTTSSSYSQNVEEEEEEESHESSRERRVSITQYKSLCHNRSSIARSSSSGRMAIVECCVCLCGFEANQEVSELPCKHFFHRGCLDKWFDNKHTTCPLCRSMD* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03799 145 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Rops11g03799 145 SMART ringv_2 99 142 IPR011016 GO:0008270
Rops11g03799 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 145 IPR013083 -
Rops11g03799 145 SMART ring_2 100 141 IPR001841 -
Rops11g03799 145 MobiDBLite consensus disorder prediction 42 70 - -
Rops11g03799 145 PANTHER - 1 144 IPR044249 -
Rops11g03799 145 SUPERFAMILY RING/U-box 99 143 - -
Rops11g03799 145 Pfam Ring finger domain 99 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03799 Rops-Chr11 71638306 71639197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03799 1 143 C3H Transcription Factor Family AT2G04240 39.726 1.58e-23 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03799 K16285 - gmx:100811790 197.978