Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03790 ATGAAGATGGATTACGCTACAGAGTTTCCAATTGATCGGCGTCCTAGAAAAAGGGCTAAATTGGTTTGGGATTTTCCTCATACCCTCTCAAAGGCTCATTCGGGGATATATTGTGGACAAGAGGTTGCTAATGTGACTACTACAAGCTTTGGGACTGCAAGGGTACTTCCTGATCATGCTGGTCTTTTTGTAAAAGGATTGGCTGAAAAAGGTTCTCCCCAATGGCGAGACGATGACAAAGATGGACATTACATGTTTGCGCTTGGAGACAATTTAACTTCTCGATATAAGATCCTCAGGAAAATTGGTGAAGGGACTTTTGGTCAGGTTTTGGAATGTTGGGATAGAGAAATCAGGGAGCTGGTTGCCATAAAAGTTGTGCGGAGTATTAAGAAATATCGCGAAGCGGCAATGTTAGAAGTTGATGTGCTCCAGTTGCTTAGGAAGTATGACAGAAATAGCCACCGCTGTGTTCAAATACGCAACTGGTTTGACTACCGAAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTTCGGAAGAACAATTATCGCCCATTTCCAGTTGATATTGTCCGTGAGCTAGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATTTACGCCTCATCCACACTGATTTGAAGCCCGAAAATATACTTTTTATTTCTCCAGAATATGTAAAAGTTCCCGACTACAAGGTTACATTCCGGTCACCAAAAGAGGGAACCTCTTATAAGAGACTGCCAAAGTCGAGTGCTATTAAGGTTATTGATTTTGGTAGTACAGCCTATGAGCACCAAGATCACAACTATATTGTCTCTACTAGGCATTATCGGGCACCTGAGGTTATTCTTGGACTTGGTTGGAGTTTTCCTTGTGACATATGGAGTGTTGCCTGCATTTTGGTTGAGTTGTGCTCGGGAGAAGCCTTATTTCAGACGCATGAGAATTTAGAGCATCTAGCCATGATGGAGAGGGTTTTAGGCCCAATACCTCAACACATGCTGAAAAGAACAGACCAGCTTGCAGAGAAGTATGTCAGAAGGGGTAGACTGAACTGGCCCGAAGGAGCAGTCTCTCGAGAAAGCATCAAGGCGGTCTTGAAACTGCATCGTCTTCCTAATTTGGTGATGCAGCATGTAGATCACTCTGCTGGGGATCTTCTTGATCTTTTGCAGGGTCTACTTCGGTTCGACCCCTCCAGTAGGCTTAAGGCTCATGAAGCTCTCAGGCATCCCTTTTTTACTAGGGGGCATTACCAGAGGTTTTAA 1296 0.4352 MKMDYATEFPIDRRPRKRAKLVWDFPHTLSKAHSGIYCGQEVANVTTTSFGTARVLPDHAGLFVKGLAEKGSPQWRDDDKDGHYMFALGDNLTSRYKILRKIGEGTFGQVLECWDREIRELVAIKVVRSIKKYREAAMLEVDVLQLLRKYDRNSHRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDIVRELGRQLLECVAFMHDLRLIHTDLKPENILFISPEYVKVPDYKVTFRSPKEGTSYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWSFPCDIWSVACILVELCSGEALFQTHENLEHLAMMERVLGPIPQHMLKRTDQLAEKYVRRGRLNWPEGAVSRESIKAVLKLHRLPNLVMQHVDHSAGDLLDLLQGLLRFDPSSRLKAHEALRHPFFTRGHYQRF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03790 431 SUPERFAMILY Protein kinase-like (PK-like) 83 427 IPR011009 -
Rops11g03790 431 ProSiteProfiles Protein kinase domain profile. 96 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03790 431 CDD PKc_CLK 83 423 - -
Rops11g03790 431 ProSitePatterns Protein kinases ATP-binding region signature. 102 132 IPR017441 GO:0005524
Rops11g03790 431 SMART serkin_6 96 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03790 431 Pfam Protein kinase domain 96 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03790 431 Gene3D Phosphorylase Kinase; domain 1 83 176 - -
Rops11g03790 431 Gene3D Transferase(Phosphotransferase) domain 1 150 423 - -
Rops11g03790 431 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 12 426 - -
Rops11g03790 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Rops11g03790 431 FunFam Serine/threonine-protein kinase AFC2 172 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03790 Rops-Chr11 71551430 71555365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03790 96 423 Core Cell Cycle Gene Families AT1G76540 25.740 1.01e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Rops11g03790 Pkinase 7.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03790 K08287 - cave:132178767 754.592