Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03785 ATGGGAAGCAAAGGTGGATTTTTCCGTTATGCAGATGGTGTTGACAAGTTGCTATTACTCTTTGGGACTTTGGGTTGCATTGGAGCTGGCCTTCAAACCCCTATTACAATGCTTGTTCTTGGTAGTTTGATAAATGATTATGCAGGTGGATCTGAACATTCTGTGTCCAACCATACTATTGACAAGTACGCTCTAAGGCTGCTGGGTGTTGCCATTGGGGTTGCTTTATCTTCTTTTCTTGAAGGACTATGTTGGACAAGAACGGCAGAAAGACAAACTTCCCGCATGAGAATTGAATATCTTAAATCAATCCTCAGGCAAGAAGTTGGTTTTTTCGACAAGCAAACTGACTCTTCCACAACCTTCCAAGTAATTGCCACTATAACTTCTGATGTTCAAACAATTCAAGACACCATGGCTGATAAGGTACCCAATTGTCTGGTTCACCTCTCAGCATTTTTCTCTAGCTTTATAGTTGCACTCTTCCTTTCTTGGAGGCTTGCTGTATCTGCTTTTCCATTCTCAATTATGATGATCATGCCAGCACTCATATTTGGGAAGGCTATGAAAGAGCTGGGAAATAAAATGAAGGATGCATATGGAGTTGCAGGTAGCATAGCAGAACAAGCAATTTCATCAATTCGCACTGTTTATTCATATGTTGGTGAGAAGCAAACACTAAACAGGTTCAGCTCTGCTCTTGAAAAGAATACGGAACTTGGCACAAAGCTAGGTCAAATAAAGGGAGTGATTATTGGAAGCATTGGTTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTGGGAGTGTTCTGGTCAGGACCAAAGGAGAAACTGGTGGCGATGTGTTTTGTGCTGAAATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGCTTCCATTTTAGAGGCAACAATAGCTGCCACCCGGATTTTTGAGATGATTGACCGAATTCCAACTATGAGCTCTAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAAGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACACCGATTCTCCAAGGACTCAATCTAAAAGTGCAGGCGAGTAAGACCGTAGGCCTAGTTGGGGGGAGTGGTTCTGGAAAATCTACTATCATCTCTTTGCTTGAAAGATTTTATGATCCTGTATATGGTGAGATATTGCTTGATGGATACGAAATAAATAGACTCAATCTTAAGTGGTTAAGGTCCCTGATGGGACTGGTAAATCAAGAGCCAATTCTCTTTGCAACATCCATAAAGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTATAAGCGCAGCAAAGGCAGCAAATGCGCATGATTTCATTGTTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAACTTGGAGCTCAGTTGTCCGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGAGACCCTAAAATCCTACTACTTGATGAAGCAACTAGTGCTTTAGATTCACAGTCTGAAAGAGTAGTGCAAGATGCCCTTGACTTGGTTTCAAGAGGGAGGACGACAATCATCATAGCACATCGCCTATCCACAATTCGGAAGGCTGATTCAATAGTAGTTCTTCAATCAGGAAGAGTGGTTGAATGTGGTTCCCATGATGAACTACTTCAACTGAACAATGGACAAGGTGGTGTTTACAGCAAAATGCTACAACTGCAACAAGCAACAAGTCAAAACGATCAAATAAACAAGAGCCCCCATGTAATGGAAAATCTAAGAAGTCCAAATTTAAGCCGGCAAAGTACCCCAACTCATCATGCATTTAGCACCTCACAACCCTTTAGCCCCATATATTCAATCAGTTTTGCAGGGTCTAGCTTTGATGACTACACCAATGAAAACTCAGAGAAATCTTCCCATTCAAACTTCTCCCAATGGCGTTTACTAAAAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGGTGTTTAGGTGCCGTTGGCTCAGGGATATGCCAGCCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATAACTCTCTCATCAAATCACAAATCAGGTTGTTCTCATCCATCTTCTGCTTCATAGCCGTTGTCAACTTCATCTCAGGCCTCATTCAACATTACAATTTTGCAATCATGGGAGAGCGCTTGCTTAAAAGGATGCGAGAAATTTTGCTAGAGAAGGTGCTGACCTTTGAGGTAGGATGGTTTGATCAAGAGGAGAACACAAGTGCAGCCATCTGTGCACGTTTGGCAACTGAAGTTAACTTGGTAAAATCCCTTGTTGCAGAACGAATGTCATTGTTAGTTCAGGTTTCAGTCATGGCTTCACTGGCTTTTATACTTGGTTTAATTGTTACATGGAGGGTGGCTCTTGTCATGATCGCTATGCAGCCTCTGATCATTGCATGTTTCTATTCAAAAAGCATCATCATGAAGAGTATGTCAGGCAAAGCAAGAAGTTCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCTACCATCAACCACAGGACTATAGCTGCATTCTCATCTGAGAAAAGGATACTGAATTTGTTCAGAACTGCTATGGAAGGTCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAGTCTCACAGTTTATGACAACAGCATCTATAGCTTTGACTTTTTGGTATGGAGGTCGGTTATTAAATCAAGGGCTAGTGGAATCAAAACATCTTTTGCAAGTTTTCCTCATTTTAATGGGCACTGGTAGACAAATTGCAGAGACAGGAAGCATGACTTCTGATATCGCTAAAAGTGGAAGAGCCATCAGTTCTGTATTTGCAATACTGGATCGGAAAAGTCAGATTGAACCTGAAGATTCTAGACATAGAAAGTTCAAGAAGACTATGAAGGGCCATATAACACTGAAAGATGTCTTTTTTTCATACCCTGCAAGGCCAGATCAAATAATTCTCAAGGGCCTCAATCTAGAAATTGAAGCTGGCGAAACAGTAGCATTAGTGGGACAAAGTGGCTCAGGAAAATCCACCATCATTGGCTTAATTGAAAGATTTTATGACCCCATGAAAGGATCCATATCCATAGACAATTGTGATATCAAGGAATTCAATTTGAGAAGTTTGAGATCACATATTGCCCTGGTGAGTCAGGAGCCTACACTATTTGCAGGAACTATACGTGACAACATTGTCTATGGGAAGGAGGATGCATCAGAGGATGAAATAAGAAGGGCAGCACATCTTGCAAATGCTCATGAGTTTATAAGTTCAATGAGAGATGGGTATGATACTTACTGTGGAGAAAGAGGAGTGCAGCTTTCAGGAGGACAGAAGCAAAGGATAGCAATTGCTAGAGCAATGCTTAAGAACCCATCAATCCTTCTTTTAGATGAAGCAACAAGTGCTCTAGACAGTGTGTCAGAGAATCTAGTGCAGGAGGCACTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCACCGTTTGTCAACAATACAAAGTGTTGACTCCATAGCTGTGATTAAAAATGGGAAGGTGGTGGAACAAGGATCACACTCAGAGTTATTGAATGTTGGATCAAATGGAGCTTATTACTCCTTAATTAGGCTACAATATGGTCACTCAACTTGA 3720 0.4113 MGSKGGFFRYADGVDKLLLLFGTLGCIGAGLQTPITMLVLGSLINDYAGGSEHSVSNHTIDKYALRLLGVAIGVALSSFLEGLCWTRTAERQTSRMRIEYLKSILRQEVGFFDKQTDSSTTFQVIATITSDVQTIQDTMADKVPNCLVHLSAFFSSFIVALFLSWRLAVSAFPFSIMMIMPALIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTLNRFSSALEKNTELGTKLGQIKGVIIGSIGLLYATWAFQSWVGSVLVRTKGETGGDVFCAEICIIWGGLSLMSALPNLASILEATIAATRIFEMIDRIPTMSSNKEKGRILKHARGEITFKEVDFSYPSRPDTPILQGLNLKVQASKTVGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYEINRLNLKWLRSLMGLVNQEPILFATSIKENILFGKEGASMEAVISAAKAANAHDFIVKLPNGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERVVQDALDLVSRGRTTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGVYSKMLQLQQATSQNDQINKSPHVMENLRSPNLSRQSTPTHHAFSTSQPFSPIYSISFAGSSFDDYTNENSEKSSHSNFSQWRLLKMNAPEWKHALLGCLGAVGSGICQPIYSYCLGIVASVYFIKDNSLIKSQIRLFSSIFCFIAVVNFISGLIQHYNFAIMGERLLKRMREILLEKVLTFEVGWFDQEENTSAAICARLATEVNLVKSLVAERMSLLVQVSVMASLAFILGLIVTWRVALVMIAMQPLIIACFYSKSIIMKSMSGKARSSQREGSQLAMEATINHRTIAAFSSEKRILNLFRTAMEGPKKESIKQSWISGSILSVSQFMTTASIALTFWYGGRLLNQGLVESKHLLQVFLILMGTGRQIAETGSMTSDIAKSGRAISSVFAILDRKSQIEPEDSRHRKFKKTMKGHITLKDVFFSYPARPDQIILKGLNLEIEAGETVALVGQSGSGKSTIIGLIERFYDPMKGSISIDNCDIKEFNLRSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIRRAAHLANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAMLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIAVIKNGKVVEQGSHSELLNVGSNGAYYSLIRLQYGHST* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03785 1239 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Rops11g03785 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1231 IPR003439 GO:0005524
Rops11g03785 1239 FunFam ABC transporter B family member 4 334 593 - -
Rops11g03785 1239 Pfam ABC transporter transmembrane region 20 282 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03785 1239 Pfam ABC transporter transmembrane region 673 939 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03785 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Rops11g03785 1239 Gene3D - 334 586 IPR027417 -
Rops11g03785 1239 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Rops11g03785 1239 Pfam ABC transporter 1013 1162 IPR003439 GO:0005524
Rops11g03785 1239 Gene3D ABC transporter type 1, transmembrane domain 7 646 IPR036640 GO:0005524|GO:0016020
Rops11g03785 1239 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Rops11g03785 1239 Gene3D ABC transporter type 1, transmembrane domain 650 973 IPR036640 GO:0005524|GO:0016020
Rops11g03785 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 309 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03785 1239 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 977 - -
Rops11g03785 1239 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Rops11g03785 1239 ProSitePatterns ABC transporters family signature. 1134 1148 IPR017871 GO:0005524|GO:0016887
Rops11g03785 1239 FunFam ABC transporter B family member 4 985 1238 - -
Rops11g03785 1239 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Rops11g03785 1239 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 959 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03785 1239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1234 IPR027417 -
Rops11g03785 1239 PANTHER ABC TRANSPORTER B FAMILY 7 685 IPR039421 -
Rops11g03785 1239 SUPERFAMILY ABC transporter transmembrane region 659 978 IPR036640 GO:0005524|GO:0016020
Rops11g03785 1239 SMART AAA_5 371 557 IPR003593 GO:0016887
Rops11g03785 1239 SMART AAA_5 1022 1208 IPR003593 GO:0016887
Rops11g03785 1239 CDD ABC_MTABC3_MDL1_MDL2 995 1234 - -
Rops11g03785 1239 Gene3D - 980 1237 IPR027417 -
Rops11g03785 1239 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03785 Rops-Chr11 71512196 71517630 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03785 20 588 Calmodulin-binding Proteins AT2G36910 35.889 8.20e-103 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03785 K05658 - gmx:100804664 2109.72