Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03777 ATGTTCCACTTCTTGCTTCTTGCCCCAACTTTGATCCATTCTTCTCCAGTTCAAGATCCTGAAGAAGTGGTGCAGGAAGTACAGATGAGCATCAATGAGCACAGGAGAAAATTGGGTTATTATTCCTGTGGGACGGGTAACCCCATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAAAATAACAGGAAGCGTCTAGCAGATTGTGCTATTGGGTTTGGCAGGCATGCCATTGGTGGCAGGGATGGCAAATTCTATGTGGTCAATGACCCTAGTGATCACCCTGTGAACCCAAAGCCAGGCACTTTAAGATATGGTGTTATTCAAGAAGAGCCTTTATGGATCATTTTCAAGTATGACATGGTGATCAAGCTAGAGATGGATCTCCTCATGAATTCTTACAAAACCATAGATGGTAGAGGAGCAAATATCCACATTGCTGGAGGGCCTTGCATTAAAGTACAGCATAAGACCAACATCATAATCCATGGCATACACATCCATGATTGCAAAAGAGGTGGCAGTGGCTATGTGAGTGACTCTCCTAACCATCGTAGCTGGAGAGCAAGATCGGATGGTGATGGGGTGACAATCTTTGGTGGGAGCCTTATTTGGGTGGACCATTGCTCCTTGTCAAGTTGTTTTGATGGCCTAATTGATGTTGTTCATGGGTCAACGGCTGTCACCATTTCCAACAATTACATGACACACCATAACAAGGTGATGCTCTTAGGCCACAGTGATTCCTATGAAGATGACAAGAAGATGCAAGTTACCATAGCATTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCCAGATGCAGGTTTGGATACTTCCATGTGGTGAACAATGATTACACTCATTGGCAACAGTACGCAATAGGTGGGAGTTCATCACCAACTATTTTCAGCCAAGGGAACAGATTTCTTGCTCCAGATGATGAAGACCACAAAGAGGTGACCAAACACTTCCGTTCATCAGAGAATGAGTGGAAGACATGGAATTGGAGGTCTGAAGGGGATCTAATGTTGAATGGGGCCTTCTTCAATCCGTCTGGAGCAGGAGCATCTTCTTCTACATATGATAAAGCATCAAGCATGGCAGCACGACCACCTATGCTTGTGGCTTCGATGACAGCAGGGGCTGGAGCTCTTACATGCAAAAAGGGCTACCTATGCTAA 1188 0.452 MFHFLLLAPTLIHSSPVQDPEEVVQEVQMSINEHRRKLGYYSCGTGNPIDDCWRCDPNWENNRKRLADCAIGFGRHAIGGRDGKFYVVNDPSDHPVNPKPGTLRYGVIQEEPLWIIFKYDMVIKLEMDLLMNSYKTIDGRGANIHIAGGPCIKVQHKTNIIIHGIHIHDCKRGGSGYVSDSPNHRSWRARSDGDGVTIFGGSLIWVDHCSLSSCFDGLIDVVHGSTAVTISNNYMTHHNKVMLLGHSDSYEDDKKMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDEDHKEVTKHFRSSENEWKTWNWRSEGDLMLNGAFFNPSGAGASSSTYDKASSMAARPPMLVASMTAGAGALTCKKGYLC* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03777 395 Pfam Pectate lyase 131 311 IPR002022 -
Rops11g03777 395 SMART amb_all 120 317 IPR002022 -
Rops11g03777 395 Gene3D - 46 388 IPR012334 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 128 144 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 192 213 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 92 117 IPR018082 -
Rops11g03777 395 PRINTS Pollen allergen Amb family signature 69 86 IPR018082 -
Rops11g03777 395 SUPERFAMILY Pectin lyase-like 31 389 IPR011050 -
Rops11g03777 395 PANTHER PECTATE LYASE 18-RELATED 18 392 IPR045032 GO:0030570
Rops11g03777 395 FunFam Pectate lyase 46 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03777 Rops-Chr11 71453527 71455622 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03777 1 395 Polysaccharide Lyase AT5G63180 70.677 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03777 K01728 - gmx:100801136 710.294