Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03776 ATGGCAATTCCACTCTCATTTATGCTACTCTTACTACTTCTTGTACCTTCCTACATTTGCTCTTCCCCACTTCAAGATCCTGAATTAGTAGTAGAAGAAGTACAAAAGAGCATTAATGCCTCAAGGAGAAACTTAGCATTTCTTTCTTGTGGGACGGGCAACCCCATTGATGATTGTTGGAGGTGTGACCCCAATTGGGAAAAGAACAGGAAGCGTTTAGCAGATTGTGCTATTGGTTTTGGTAAGCATGCCATTGGAGGGAGGGATGGTAAAATATATGTGGTCACTGACCCAGGTGATCACCCTGTGAACCCCAAGCCAGGAACTCTAAGATATGGTGTTATCCAAGAGGAGCCATTATGGATCATCTTCAAGCGTGACATGGTGATCAAGCTCAAGCAAGAGCTTATGATGAATTCTTTCAAAACTATTGATGGAAGAGGAGCAAGTGTGCACATTGCTGGTGGACCTTGCATTACTATACAATTTGTGACTAACATTATAATTCATGGGATTAACATCCATGACTGTAAACAAGGAGGGAATGCCTATGTGAGGGACTCCCCTACTCATTATGGTTGGAGGACTTTGTCAGATGGTGATGGTGTGTCAATCTTTGGTGGAAGCCATGTTTGGGTGGACCATTGCTCTCTCTCCAATTGCCGTGATGGCCTAATTGATGCCATTCATGGATCTACAGCTATCACCATTTCCAACAATTACTTGACCCGCCATAACAAGGTCATGCTTTTAGGCCACAGTGATTCTTTTACTAGAGACAAGAATATGCAAGTCACCATTGCTTTTAACCATTTTGGAGAAGGGCTAGTCCAGAGAATGCCAAGATGCAGGCATGGTTACTTCCATGTGGTGAACAATGACTACACACATTGGAGAATGTATGCCATAGGGGGGAGTGCTGCTCCAACTATCAACAGTCAAGGCAATAGATTTCTTGCTCCCAATGACATGACCTTCAAAGAGGTCACAAAGCGTGAGAGTACACCACAGAGTAAATGGAAGAATTGGAATTGGAGATCTACAGGAGATTTGATGTTAAATGGTGCCTTCTTTACACCATCAGGAGGAGGTGCAGCTTCAAGCTATGCCAGAGCATCGAGTCTGGCAGCAAAACCATCTTCACTTGTCAGTTCTATCACAGCATCAGCTGGATCACTTAAGTGCAGAAAGGGCTCACGTTGCTGA 1206 0.4386 MAIPLSFMLLLLLLVPSYICSSPLQDPELVVEEVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTRHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPNDMTFKEVTKRESTPQSKWKNWNWRSTGDLMLNGAFFTPSGGGAASSYARASSLAAKPSSLVSSITASAGSLKCRKGSRC* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Rops11g03776 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Rops11g03776 401 FunFam Pectate lyase 53 394 - -
Rops11g03776 401 Gene3D - 53 394 IPR012334 -
Rops11g03776 401 Pfam Pectate lyase 134 318 IPR002022 -
Rops11g03776 401 SMART amb_all 127 324 IPR002022 -
Rops11g03776 401 SUPERFAMILY Pectin lyase-like 38 396 IPR011050 -
Rops11g03776 401 PANTHER PECTATE LYASE 18-RELATED 26 399 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03776 Rops-Chr11 71446780 71448787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03776 5 401 Polysaccharide Lyase AT5G63180 77.475 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03776 K01728 - gmx:100782388 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03776 11 71446780 71448787 Rops11g03776 11 71446780 71448787 ECH
Rops11g03776 11 71446780 71448787 Rops2g04090 2 74425962 74427995 ECH
Rops11g03776 11 71446780 71448787 Rops10g00745 10 17797537 17800021 ECH