Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03770 ATGTCGTCATTGTCGATGTTGCAGTTCTTTGTTCGTATGATATCAGATGGAAACAGTGAGGTGATGCAGGGTTGGAAAGAAGATAGCGTGAAATTGATTCACGAAAAGATCGAGAGAATTACAGGAATTCCAGTTCACAAGCAGAGGCTAATATACAAAGGGAAGCAACTTAAGTTGGAGCAGAGTCTTGGTGAGTGTGGGATACAAAACGACGCGAATCTTCAGTTGGTTGGGTACTTGCAAAGTAGAGGTGGGGATTTATGGAAGGTGATAGACATCCTTTGCCGTATCGACAGAGGAGAAGTGGTGCACGACGCTTTCAAGATACTCAAATAA 336 0.4315 MSSLSMLQFFVRMISDGNSEVMQGWKEDSVKLIHEKIERITGIPVHKQRLIYKGKQLKLEQSLGECGIQNDANLQLVGYLQSRGGDLWKVIDILCRIDRGEVVHDAFKILK* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03770 111 Gene3D - 4 79 - -
Rops11g03770 111 ProSiteProfiles Ubiquitin domain profile. 7 77 IPR000626 GO:0005515
Rops11g03770 111 SMART ubq_7 7 79 IPR000626 GO:0005515
Rops11g03770 111 Pfam Ubiquitin family 10 78 IPR000626 GO:0005515
Rops11g03770 111 SUPERFAMILY Ubiquitin-like 4 79 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03770 Rops-Chr11 71404543 71404878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03770 7 96 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 33.333 7.35e-09 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03770 - - qlo:115989531 120.168