Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03768 ATGGAGTGGCATCATGATTTCTTCCTGGTGGCAACAAGTACCTTAGGCTTCATCAGTGTGTGCAAAGCTCTTATCCATTTTCTCAACTGGGTATGGATGATGTTCTTGAGGCCACCAAAACAACTCAAAGAATATGGTTCATGGGCTATAATCACTGGATCCACTGATGGAATTGGCAAAGCCTTGGCCTTTGAGTTGGCATCTAAGGGACTTAATCTTCTCTTGGTTGGTAGAAACCCTCAAAAACTTGAAGCCATATCTAAGGAGATAAGAGAAAGACATGGTGGGAGTGTTGAGGTCAAGTTTGTAGTCATAGACATGCAAAGAGTTAATGGAGAGGAAATAACAAAAAGGATAGAGGAAGCAATAGAGGGGATTGATGTTGGTATGTTAGTTAATAGTGCAGGTTTGGCTTACCCTTATGCAAAGTTTTTTCATGAGGTTGATTCTGAGTTGATGGATGCAATTATAAAAGTGAATGTGGAGGGAACAACTTGGATCACAAAAGCAGTGCTTCCTAGTATGATCAAGAAGAAAAAGGGAGCAATTGTTAACATTGGTTCTGGTTCCTCTGTTGTTCTTCCTTCATATCCTTTAGTCACCCTCTATGCTGCTACAAAAGCGTATCTTGCAATGTTCTCGAGATGCATCAGTTTGGAATACAAGCATCAAGGCATTGACATCCAGTGTCAGGTTCCATTATTTGTGTCAACAAAGATGACCAAGATGAGGGCCTCACTTTTTGTTCCAACTCCTGATACGTATAGCAAAACAAGCATAAGGTTCATTGGCTATGAAAAACTGGTTGTGCCTTATTTCCTCCATTCTCTGCAGGGGTTTCTCATAAAGGCAATTCCTATTGCATTAATGGATTCCTACATGCTGCGTTATTTTCTTTACTGGCGCAAAAGAGGACTCTTAAAGGAATCCAAAATTAAAGGATTAGAAGAAGCATTTAATTCTTAA 966 0.3986 MEWHHDFFLVATSTLGFISVCKALIHFLNWVWMMFLRPPKQLKEYGSWAIITGSTDGIGKALAFELASKGLNLLLVGRNPQKLEAISKEIRERHGGSVEVKFVVIDMQRVNGEEITKRIEEAIEGIDVGMLVNSAGLAYPYAKFFHEVDSELMDAIIKVNVEGTTWITKAVLPSMIKKKKGAIVNIGSGSSVVLPSYPLVTLYAATKAYLAMFSRCISLEYKHQGIDIQCQVPLFVSTKMTKMRASLFVPTPDTYSKTSIRFIGYEKLVVPYFLHSLQGFLIKAIPIALMDSYMLRYFLYWRKRGLLKESKIKGLEEAFNS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03768 321 PIRSF 11-beta-HSD1 3 308 - -
Rops11g03768 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Rops11g03768 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Rops11g03768 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Rops11g03768 321 Pfam short chain dehydrogenase 48 243 IPR002347 -
Rops11g03768 321 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 42 270 - -
Rops11g03768 321 Gene3D - 42 270 - -
Rops11g03768 321 PANTHER RH59310P 7 311 - -
Rops11g03768 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 302 IPR036291 -
Rops11g03768 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 190 218 IPR020904 GO:0016491
Rops11g03768 321 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Rops11g03768 321 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Rops11g03768 321 PRINTS Glucose/ribitol dehydrogenase family signature 48 65 IPR002347 -
Rops11g03768 321 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Rops11g03768 321 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Rops11g03768 321 CDD 17beta-HSD1_like_SDR_c 46 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03768 Rops-Chr11 71380389 71382568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03768 15 310 Lipid Metabolism Gene Families AT1G67730 52.525 1.08e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03768 K10251 - gmx:100816067 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03768 11 71380389 71382568 Rops11g03768 11 71380389 71382568 ECH
Rops2g01080 2 15310266 15314010 Rops11g03768 11 71380389 71382568 PCT