Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03753 ATGTATTTATCAGAAAAACCTCGTCCAATCGATTTCTACAAGGAGGAAGGTACACGAGACATGATGATCGAGGTGGTTTCCAACGCGGAGCTTCCTCCGCCGCAACACCACCAACAACCACCGCCGATGATACTCGGCGAGAGCTCCGGCGAGGACCCGGAGGTTGAGATCAAGGCGCCGAAGAAGCGAGCGGAGACGTGGGTTCAAGATGAAACGCGAAACCTCATTGGGTTAAGAAGAGAGATGGATGCGCTTTTCAACACTTCGAAGTCGAACAAGCACTTGTGGGAACAGATATCGGCGAAGATGAGGGAAAAGGGTTTTGATCGGTCGCCAACTATGTGCACCGACAAGTGGAGGAACCTGTTGAAGGAGTTCAAGAAAGCGAAGCATCAAGATAGAGGAGGGAGTGGGTCTGCTAAGATGTCTTATTACAAAGAGATTGATGAGATCCTTAGAGAGAGGAGCAAGAGTGTGCAGTATAAGAGTCCTACTCCTCCTCCCAAAGTTGAATCCTTCATGCAGTTTGCTGATAAAGGTATTGATGATACCAGCATATCTTTTGGGCCTGTTGAAGATACTGGAAGACCAACACTAAATCTTGAGAGAAGCTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACTCCTGGAAATGCTGGGGAAAGTCAGTCATGTTGCGGAAGGGTTATATCAGTCAAATGGGGCGACTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAGGAGGCAATTAGGGCTGCTTTTAGGTTGAGAACCAAACGTGCATTCTGGTTGGAGGATGAGGAACAGATTATCAGAAGTATTGACCGTGACATGCCCATAGGAAATTACACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTATGCCTCTATGATGAGTCTGACCATATCCCTGTGCACACTGAAGAGAAGATATTCTACACTGAAGATGATTACCGTGATTTTCTGGCACGCCGGGCTTGGACAGGTCTAAGAGAATTTGATGGCTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1137 0.467 MYLSEKPRPIDFYKEEGTRDMMIEVVSNAELPPPQHHQQPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRNLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKSVQYKSPTPPPKVESFMQFADKGIDDTSISFGPVEDTGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETPGNAGESQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDESDHIPVHTEEKIFYTEDDYRDFLARRAWTGLREFDGYRNIDNMDDLRPGAIYRGVS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03753 378 Pfam Myb/SANT-like DNA-binding domain 66 151 IPR044822 -
Rops11g03753 378 SMART sant 63 125 IPR001005 -
Rops11g03753 378 Gene3D - 67 129 - -
Rops11g03753 378 MobiDBLite consensus disorder prediction 30 63 - -
Rops11g03753 378 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Rops11g03753 378 FunFam trihelix transcription factor GT-1 67 129 - -
Rops11g03753 378 CDD GT1 65 130 - -
Rops11g03753 378 PANTHER FI21293P1 41 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03753 Rops-Chr11 71224504 71232430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03753 20 377 Trihelix Transcription Factor Family AT3G25990 70.845 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops11g03753 Myb_DNA-bind_4 3.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03753 - - ccaj:109807736 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03753 11 71224504 71232430 Rops11g03753 11 71224504 71232430 ECH