Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03751 ATGAATTGTTATGCTTTAACATCCTCAAAAATTGCTATTGAACTCAATGCAAGTGAATATGCATGGGAAACAGATCTAAACCACCAAAAAGCAACAATTAAAATTTCAGAAATTCTGAAGATAAAGAAAGGTCAAAAGGTTGCAATTTGTGGATTAGTAGGATCTGGAAAATCAAGCTTACTATGCTGTATGCTTGGTGAGTTATCAAGGATTTCTGGGGAAGGAATCAAAATCAATGGAAGTAGAAGTTACGTACCACAAAGTCCTTGGATTCAATCTGGAACTATAAGGGAAAATATATTGTTTGGAAAGGAAATGAACAAGGATTTATATGAGAAAGTTCTGGAGGGTTGTGCTTTACACCAAGATATGAACATGTGGGTTGATGGAGATTTGACAATGGTGGGGGAGAGAGGCATAAACTTAAGTGGAGGACAAAAACAAAGAATTCAATTGGCCAGGGCTGTTTATAATGATTCAGATATTTATTTTCTTGATGATCCTTTCAGTGCTGTTGATGCACATACAGGAACACATTTGTTTAAGAAATGTCTTAAGCAACTTTTATATGAGAAAACAGTTGTTTATGCAACCCATCAACTGGAATTCTTGAAAGCAGCTGATATCATTATAGTAATGAAAGATGGAAAGATTGTAGAAGCTGGAAAGTATAATGATTTGATAGCCTTTCCAAATTCCAAACTTGTTGAACAAATGGCTGCTCATAGAGAAACACTGAACCGAGTAAATCTATGCAAGGATGATGATTTTGTGAGCCATAGATCCAGCCAAACAAATGAGACTGAAAGTGCTGAAAAAAATCTTCAAGAGACAATCAACGATTGCAATCTTTTGAAGAAAACCAATGAAGAGGAGGCTGAGACTGGTCAAGTGAAATGGAATGTTTACTCATCCTTTGTTCCATTTGCTTATGGAGGTTCACTACTCCCAGTTGTTGTTCTATGCCATATTTTCTTTCAAGCATTGCAGATGGGAAGCAATTATTGGATTGCTTGGGCTGCAGAACAAAGGGACAAGGTAACTAATGAGCGGCTTATAGTAATATTTGTTCTACTATCCGGTGGTAGAACCATCTTCATACTTGGAAGGACTGTTTTAATGGCAACAATTGCAGTGGAGACTGCACAATGCCTTTTTCATAGGATGATAACATCAGTTTTCAGGGCTCCCATTTCATTTTTTGATACCACACCTTCAAGCCGAATCCTGAGTAGGTCTTCTACGGATCAAAGTATAATAGACACAGACCTACCTGTCGGATTAGCTGGACTTGTATTTGCACTTATCCAGTTAGTGAGTGTCATTATACTAATGTCCCAGGTTGCATGGCAAGTCACTTTCCTGTTTCTTGTAGTGCTCGCTATCTCCATTTGGTACCAGGCTTATTACATCACTAGTGCCAGGGAATTAGCCAGGATGGTACGGATTCGAAAGGCTCCAATCTTGCATCACTTCTCAGAATCAGTTGCAGGGGCTGCCACAATTCGATGTTTCAATCAAGAGCAAAGATTTTTTACCAAAGTTATGGGTCTAATTGATGATTATTCTCGGGCAGCCTTTTACAATTATGCCACCATGGAATGGTTGTCTATCCGAGTCAATCTTCTCTTTAATCTGGTCTTATACTTTGTTCTCACCATCTTGGTTACTATGCCAAGGTCTGCCATTGATACTACAGCCACGATCCTATCAGCTTTGGCAACTTTCCATATTTTACAAGAAGCAATCTACAACTTGCCTGAGCTTATCTCCATCGTAGCTCAAACAAGAGTATCACTTGATAGAATCCAGGAGTTCATCAAACAAGAGGATAAAACATTGTTGATGAATTGTCATGCTTTAACATCCTCAACAATTGCTATTGAACTCAATGCAAGTGAATATGCATGGGAAACAGATCTAAACCACCAAAAAATTGAGATTGTATCAATGATACTGGCAAAGATCCACCAGAGGATTAAGGCAAGTGGCCACCTTTTGTTGTCCTTGAATGTTCTCTTCATTGAATATAATGAAACTAGAGTGGCTAAAACCCAAGTTAAGGCCAAGGAAACAGAACTATATCCTATGATTCTTCCACTGCTATATTCATAA 2115 0.3811 MNCYALTSSKIAIELNASEYAWETDLNHQKATIKISEILKIKKGQKVAICGLVGSGKSSLLCCMLGELSRISGEGIKINGSRSYVPQSPWIQSGTIRENILFGKEMNKDLYEKVLEGCALHQDMNMWVDGDLTMVGERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLKQLLYEKTVVYATHQLEFLKAADIIIVMKDGKIVEAGKYNDLIAFPNSKLVEQMAAHRETLNRVNLCKDDDFVSHRSSQTNETESAEKNLQETINDCNLLKKTNEEEAETGQVKWNVYSSFVPFAYGGSLLPVVVLCHIFFQALQMGSNYWIAWAAEQRDKVTNERLIVIFVLLSGGRTIFILGRTVLMATIAVETAQCLFHRMITSVFRAPISFFDTTPSSRILSRSSTDQSIIDTDLPVGLAGLVFALIQLVSVIILMSQVAWQVTFLFLVVLAISIWYQAYYITSARELARMVRIRKAPILHHFSESVAGAATIRCFNQEQRFFTKVMGLIDDYSRAAFYNYATMEWLSIRVNLLFNLVLYFVLTILVTMPRSAIDTTATILSALATFHILQEAIYNLPELISIVAQTRVSLDRIQEFIKQEDKTLLMNCHALTSSTIAIELNASEYAWETDLNHQKIEIVSMILAKIHQRIKASGHLLLSLNVLFIEYNETRVAKTQVKAKETELYPMILPLLYS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03751 704 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 318 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03751 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 230 IPR027417 -
Rops11g03751 704 Gene3D ABC transporter type 1, transmembrane domain 281 612 IPR036640 GO:0005524|GO:0016020
Rops11g03751 704 FunFam Multidrug resistance-associated protein 4 2 256 - -
Rops11g03751 704 Pfam ABC transporter transmembrane region 323 557 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops11g03751 704 SMART AAA_5 43 225 IPR003593 GO:0016887
Rops11g03751 704 Gene3D - 7 256 IPR027417 -
Rops11g03751 704 FunFam ABC transporter C family member 5 281 612 - -
Rops11g03751 704 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 36 559 - -
Rops11g03751 704 CDD ABC_6TM_ABCC_D2 316 607 IPR044726 GO:0140359
Rops11g03751 704 ProSitePatterns ABC transporters family signature. 142 156 IPR017871 GO:0005524|GO:0016887
Rops11g03751 704 SUPERFAMILY ABC transporter transmembrane region 316 610 IPR036640 GO:0005524|GO:0016020
Rops11g03751 704 CDD ABCC_MRP_domain1 11 217 - -
Rops11g03751 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 240 IPR003439 GO:0005524
Rops11g03751 704 Pfam ABC transporter 39 169 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03751 Rops-Chr11 71205006 71216431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03751 39 245 Calmodulin-binding Proteins AT2G36910 29.333 1.96e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03751 - - pvu:PHAVU_002G176600g 822.387