Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03730 ATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTTTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGACCATTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGTCAATCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAATTGGAATCCTGCACAAGACTTACAGGCCCAGGATAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTCATGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAGGAGCTAGTTTATTCTCGTCAGTTTGTGAAGTGTAGAAGTTTAGCTTTGGATAATGATGAGCTTTTTAACTGTAAAAAGTGGTGA 504 0.4127 MGLSDVKHCGKMRALEKLLFSWISHGDKVLLFSYSVRMLDILEKFLIRKDHCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVMVFRLLAAGSLEELVYSRQFVKCRSLALDNDELFNCKKW* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03730 167 Gene3D - 2 163 IPR027417 -
Rops11g03730 167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 14 167 IPR001650 -
Rops11g03730 167 Pfam Helicase conserved C-terminal domain 11 123 IPR001650 -
Rops11g03730 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 150 IPR027417 -
Rops11g03730 167 SMART helicmild6 40 123 IPR001650 -
Rops11g03730 167 PANTHER SNF2/RAD54 FAMILY MEMBER 5 151 - -
Rops11g03730 167 CDD SF2_C_SNF 5 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03730 Rops-Chr11 70967921 70976929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03730 12 155 RAD5 or RAD16-like Gene Family AT5G43530 38.889 1.17e-24 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03730 K20098 - vvi:100259230 284.648