Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03728 ATGATGGATGTTGCAGAGGTTGAAGAAAATCTTTTTGCAGCATCTGATGCCAAGTTACATGGAGAAATGTGCAAGGGTCTTTCTGCAATATATTGCAAAATATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAGGCAAAGAATGTTCTTCGGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAGTGTGCTCTTGTGGATAGTTTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGATTGATGAAATTGTCAATGAACTTGCTAGTACGGTATTTGCTCTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTTTAATGACGGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTCGGAATCACATCTTCAAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTTATGCGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTCTAAGATTGCTTGAGGACGGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAACAATAGGAAATCAGGGCAGATGCTCCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAAAAATGGCTCAGTGATGGGCACAATACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTTAAAGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTGTTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTGAAAGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAACTGGGGCGAATGCAACTGAAAGTTTGTCCATGCAAGAGGAAGACAATGAGCAGTATTCTAGTTTCCTAGAAGTATTGACTGAAGGGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACGGCTAAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGACATTTATGGGGGATAATGGATTTGTTGAAGCACTTTTGCAGTTTCTGCAATCAGCTGTGTGTGAAGGGGATGTGATGGCTCAGGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAACAAGGAAATTATGATATCAGCAGGAATATTATCGTTGTTGGAGGAAATGATTTCAAAAACTAACTCGTATGATTGTGTAACTGCCTTGTATCTGAATCTTTCTTGCCTTGAAGAAACCAAGCATATGATTGGCACGAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAACAAAAACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCCCTCTATAATCTTTCTTCTGTGCCCTCTAACATTCCAAACCTCCTTTCATCTGGCATCATCAATGGCCTACATTCCCTTCTTGTGGGCCAGGATGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCAGTTTCTCAAGTGGGAAGAGAGGAAATAATGTTAGCTCCAGGACTCATAAGTGCATTAGCTTCAATACTGGATACTGGTGAGCTCATAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTGATTTTGTGTAACAGGAGTGAGAAATGTTGTGAGATGGTCCTTCAAGAAGGGGTTATACCTGCATTGGTGTCAACATCAGTGAATGGAACCTCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCAGAGAGCAACGACAGAGAGAGCATTCACCTGTTAATACACATCAATGCTCACCTGAAACCAGTGATTTGTCCATGCCTCCACCTGAAACCAAACCGCTATGTAAATCAATATCAAGAAGAAAGGTGGGGAAAGCTTTTAGCTTTTTTTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2295 0.4109 MMDVAEVEENLFAASDAKLHGEMCKGLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSECSKLYLAITGDSVLLKFEKAKCALVDSFKLVEDIVPQSIGCQIDEIVNELASTVFALDPSEKQVGDDLIALLQQGRKFNDFNDGNELECFHLAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTLRLLEDGVPGSHCQAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVPVPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKLKGVKVVPVEESGISEQTGANATESLSMQEEDNEQYSSFLEVLTEGNNWKRKCKVVERLRLLLRDDEEARTFMGDNGFVEALLQFLQSAVCEGDVMAQENGAMALFNLAVNNNRNKEIMISAGILSLLEEMISKTNSYDCVTALYLNLSCLEETKHMIGTSQAVQFLIQILQTKTEVQCKLDSLHALYNLSSVPSNIPNLLSSGIINGLHSLLVGQDDCMWTEKCIAVLINLAVSQVGREEIMLAPGLISALASILDTGELIEQEQAVSCLLILCNRSEKCCEMVLQEGVIPALVSTSVNGTSRGREKAQKLLMLFREQRQREHSPVNTHQCSPETSDLSMPPPETKPLCKSISRRKVGKAFSFFWKSKSYSVYQC* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03728 764 PANTHER U BOX DOMAIN-CONTAINING 24 708 - -
Rops11g03728 764 SMART arm_5 623 664 IPR000225 GO:0005515
Rops11g03728 764 SMART arm_5 539 580 IPR000225 GO:0005515
Rops11g03728 764 SMART arm_5 454 498 IPR000225 GO:0005515
Rops11g03728 764 SUPERFAMILY ARM repeat 428 701 IPR016024 -
Rops11g03728 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Rops11g03728 764 CDD RING-Ubox_PUB 280 332 IPR045210 -
Rops11g03728 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Rops11g03728 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Rops11g03728 764 MobiDBLite consensus disorder prediction 714 728 - -
Rops11g03728 764 Gene3D - 405 711 IPR011989 -
Rops11g03728 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Rops11g03728 764 Coils Coil 176 196 - -
Rops11g03728 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Rops11g03728 764 MobiDBLite consensus disorder prediction 708 734 - -
Rops11g03728 764 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Rops11g03728 764 SUPERFAMILY RING/U-box 276 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03728 Rops-Chr11 70945383 70950615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03728 2 764 U-box Gene Family AT1G27910 66.795 0.0 1012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03728 - - gmx:100804344 1310.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03728 11 70945383 70950615 Rops11g03728 11 70945383 70950615 ECH
Rops11g03728 11 70945383 70950615 Rops2g01362 2 19530101 19535217 PCT