Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03717 ATGGTGATGGTAATGGCGGAGGAAGAAGAAGAAAACGTGGAATCGACCCGACCCGAATTTCCGAGGGGTCGGGTTAAGAAGATAATGACTATGGACAAGGACGTGAAGAGAGTGAGCTCAGAAGCGTTGTTCCTGGTGTCGCGCTCCACGGAGTTGTTTCTCCAATTTCTGGCTGAAAAATCAGCGCGTGTTGCCATTGAGAAGAAACGCAAGACCGTGAAGCTCGAGCACATAAGAATCGCCGTCAAGAGGCACCAGCCAACCAGTGATTTTCTCCTGGATTCACTTCCACTTCCTCCTGAGCCCGCTCCTGCTTCGGATCGGCCCAAATCTGGTACATCTGGTACTCGTCGCATCGATCATTTCTTCAGAAAACCAGAAGCCCAAGCCCAGGCCCAAGAACCCGTACCTATAGATGAGTCTTAG 426 0.5117 MVMVMAEEEEENVESTRPEFPRGRVKKIMTMDKDVKRVSSEALFLVSRSTELFLQFLAEKSARVAIEKKRKTVKLEHIRIAVKRHQPTSDFLLDSLPLPPEPAPASDRPKSGTSGTRRIDHFFRKPEAQAQAQEPVPIDES* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03717 141 SUPERFAMILY Histone-fold 16 99 IPR009072 GO:0046982
Rops11g03717 141 FunFam Nuclear factor Y, subunit C13 5 97 - -
Rops11g03717 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 82 IPR003958 -
Rops11g03717 141 Gene3D Histone, subunit A 2 97 IPR009072 GO:0046982
Rops11g03717 141 MobiDBLite consensus disorder prediction 113 127 - -
Rops11g03717 141 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 114 - -
Rops11g03717 141 MobiDBLite consensus disorder prediction 90 141 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03717 8 132 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.308 4.85e-48 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops11g03717 CBFD_NFYB_HMF 4.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03717 - - ccaj:109814845 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03717 11 70849068 70849493 Rops11g03717 11 70849068 70849493 ECH