Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03703 ATGGAGTGGAATGCAAAATCTCTCGGCCAGTGGGACTGGGAGCACTTGTTCTTCTTGAATGCAAAAGCAACAGAAAATTCCAGGTTACAACCTACTGATTGGAGTGGCGAAACAGATCGAGAAATCAATGTTGGAGTGTTGTATCCATCAGGTGGTAGTGGTTGTTCTGGGGTGTCTGAACTAATACATGCTTCTTCCTCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAAGACATCTTTGTTAACTTTGGAAGGTTCTCAAGATGATTCGAGTGGTAAGAAAGAATTGTCCAAAGGTGAACCAGTTGAAACTTCTCCAACAGCAGAGCCCTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTTGGTAAAAGATTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAAAGCATCTTCTTCTGGGATTCCTATGTCTCGTGGAAAGAAATGTAAATCCATTAGTCAGAACTTGCAACATGCAAGCTGCCAGGTGGAAGGCTGTGGTCTTGATCTCTCATCTGCTAAAGATTACCATCGCAAACATAGAGTTTGTGAAAGTCATTCCAAATCACCTAAGGTGGTTATAGCTGGTTTGGAACGTCGATTTTGTCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGATCACAAGAGAAGCTGCAGAAGACGTCTTTTAGATCACAATGCAAGGCGTCGCAAACCTCAGCATGAAGCAGTGCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGACGGGAGGCAAATAATGAATCCATATGCATTTTCAAGGACTGCTACAAATTTAGCATGGCAAGACATACACAGCAGCAAGCTCCCCCAAACAAAAGATTTTCTTTTGAAGCCTGCAAAAACGTTCAATAAGATGCCAAGTATTGTCACTATGCTTTCTGATGATTCTAGTGGCCTTCTTACATCCAGAGGCATACGGACCAAGAGTATTGTTCCAGGTATTGAAGATCCCACTACCTCGTCTGGTACAAATGCTACACAAGATTTTAGCCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATATGAGACTAGGTCCCTTTCACTAGAACACTCCAACCGGACAACCAGTACCACTCAGTCCATAACACATGCAATGACTCAGCGCTTACCTCTTTCTTCATCAGAATATTGGCACGCAGATCATCAACCGGCCAGCTCCAGCATCTGTATCCCATACTCAGATTGTGATAATAGCACTCGCTTTCAAGACTTTCAGCTGTTGAGCGCACCCTTTGAGTCAGGTTTTCCTTGCAACCAGCTGGATTGA 1347 0.4365 MEWNAKSLGQWDWEHLFFLNAKATENSRLQPTDWSGETDREINVGVLYPSGGSGCSGVSELIHASSSRSSKSASNNSSSNGDSKTSLLTLEGSQDDSSGKKELSKGEPVETSPTAEPSSVSGEPLLTLKLGKRLYFEDVCAGSDSKKASSSGIPMSRGKKCKSISQNLQHASCQVEGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHALSEFDDHKRSCRRRLLDHNARRRKPQHEAVQLNPSALSSSPYDGRQIMNPYAFSRTATNLAWQDIHSSKLPQTKDFLLKPAKTFNKMPSIVTMLSDDSSGLLTSRGIRTKSIVPGIEDPTTSSGTNATQDFSRALSLLSTNSWGAYETRSLSLEHSNRTTSTTQSITHAMTQRLPLSSSEYWHADHQPASSSICIPYSDCDNSTRFQDFQLLSAPFESGFPCNQLD* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03703 448 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Rops11g03703 448 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Rops11g03703 448 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Rops11g03703 448 MobiDBLite consensus disorder prediction 66 94 - -
Rops11g03703 448 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Rops11g03703 448 Pfam SBP domain 173 246 IPR004333 GO:0003677
Rops11g03703 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 396 IPR044817 GO:0003677
Rops11g03703 448 MobiDBLite consensus disorder prediction 66 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03703 Rops-Chr11 70609689 70615777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03703 1 407 SBP-box Gene Family AT5G43270 40.376 8.93e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops11g03703 SBP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03703 - - gmx:100781289 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03703 11 70609689 70615777 Rops11g03703 11 70609689 70615777 ECH