Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03700 ATGGTCACCAAGATGGGTTTTCTGGGAGATGCTGGAAGGATTTGGCTCAAATGGTGGGAGAAGATCTTGGGAAACACTAGTAAAATCCACCAACACTACTACCAGTGTATTGGGTCCAAGAGAGTTAGGAGAACCTTTTGGAGAAAACTTTTGCTTACATGGGTGTTTGGTTGGTCCATAGTATCTCTGTGGATCTTCTGCTACATGAGCTTACAAGCCACTGAGAAGAGGAAAGAAACACTTGCTAGCATGTGTGATGAAAGGGCCAGGATGCTGCAGGATCAATTTAATGTGAGTATGAACCATATCCAAGCCATGTCCATTCTGATCTCAACATTCCATCATGCCAAGAACCCCTCTGCCATAGACCAGAGAACTTTTGCCAAGTATACAGAAAGAACTGCTTTTGAGAGGCCCCTTACAAGTGGAGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGACTATTAAGAGTATGGATACCCTGGAGCAGAACCCGGTTCATAAGGATGATTATGCTCCAGAGGCCTTGGAACCATCCCCCATTCAGGAAGAATATGCTCCTGTAATCTTTGCACAGGAAACAGTTTCACATGTCATATCTGTTGATGTGCTTTCTGGAAAGGAAGACCGTGAAAATGTGTTACGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCTCCCTTCAGACTGTTAAAAACAAATCGTCTAGGGGTCATCCTAACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCTACCCCAAATGAAAGGGTTCAAGCAACTGATGGGTATCTTGGTGGGGTCTTTGAAATTGAGTCATTAGTGGAGAAATTGCTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTTGATGTGTATGATACTACAAATCATACCCACCCAATTGCCATGTATGGTTCAAATGTATCAGGTGATGGGTTCTATCATGTGAGCTCTCTTAATTTTGGAGATCCTTTCAGGAAGCATGAAATGCACTGCAGGTTCAAACAGAAACCACCATGGCCATGGTTGGCAATAACTACATCGATTGGCATCCTTGTTATTGCACTCCTCGTTGGACATATTTTTCATGCAACTGTGAATCGAATTGCCAAAGTAGAGGATGATTACCGTGAGATGATGGAGCTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAATTCCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGAATATGCTTGTGGACACAGATCTAGATGTAACTCAACAGGAATATGTCAGAACGGCACAGGGCAGTGGAAAAGCTCTGGTGTCAATTATAAATGCGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTAGAACTTGAGGCTGTGTTGTTTGACATACGGGCAATTTTGGATGATGTGTTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGCTTATGTCTCAGATCGGGTTCCTGAACAGCTAATAGGTGATCCAGGAAGGTTTCGACAAATAATTACGAATCTCATGGGTAACTCGATTAAGTTCACGGACAAAGGGCATATCTTTGTCACTATCCATCTTGTTGAGGAGGTCGTCCATCCGATAGAAGTTGAGACAGAATCAACTTTAAAAGATACATTAAGTGGTTTCTTGGTTGCTAATGGTCGTGGGAGCTGGGAAAGATTCCAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCATCTTCCTCTAATGATCTGATCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGTATTCCTCTAGAAGCTCAGTCCAAGATCTTCACTCCATTCATGCAGGTAGGTCCATCCATCTCCCGAAAACATGGGGGAACTGGTATTGGTCTAAGCATTAGTAAGTGTTTGGTCAGCCTCATGAATGGTGAAATTGGATTTGTGAGCAAACCCAAGATTGGATCCACTTTCACATTTACTGCTGTCTTCACCAATGCATGTCCTACTTCAAGTGAGTTCAAAAGTCAGCAAATCAACAATCAACCTCATCCTACATCCTCAGAATTTCATGGTATGGCTGCATTAGTTATTGACCATAGACCTGTCCGAGCTAAAGTTTCAAGATATCACCTCCAAAGACTTGGCATTCATGTTGAATTAGTATCAGATTTAAATCAAGGTTTGTCCACCATAAGCAATGGGAATGTAGTTATTAACATGGTCCTGATTGAACAGGAGGTATGGGATAGAGACTCAGGTGTTTCATCTCACTTTGTCAATAACATTAGGAAAGTTGATCACGGGGTTCCTCCAAAGCTATTCATTCTTGTTAATTCTAGTAGTTCTTTTAGAGCAAGTTCTGTAACTTCAGGTGTTCATGACGTCACAAAACCTTTGAGAGCAAGTATGCTTGCTGCTTCACTACAACGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAACGGGGAGCATCAGAGTTTGTCTCTTCACCATCTTCTTCTTGGGAGAAAAATTCTAATTGTAGATGACAATAGTGTGAACCGCACTGTAGCAGCTGGTGCTTTAAAGAAATATGGAGCTGATGTGGTTTGTGTAAGCAGTGGGAAAGATGCCATCTCTTTGGTGAAGCCACCCCATCAGTTTGATGCATGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACACACCGGATTAGGGAGATTGAACAAAGTGTGAACAGAGAAGTGTCTGTTGAAGCCTTTGAGAATAATTCAAAGTGGCATCTACCCATTTTGGCTATGACTGCAGATGTGATCCAAGCCACACATGAGGAATGCCTGAAGTGTGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCAAGGTTTTTCCAATTATCATGA 2967 0.4226 MVTKMGFLGDAGRIWLKWWEKILGNTSKIHQHYYQCIGSKRVRRTFWRKLLLTWVFGWSIVSLWIFCYMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFAKYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKSMDTLEQNPVHKDDYAPEALEPSPIQEEYAPVIFAQETVSHVISVDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERVQATDGYLGGVFEIESLVEKLLQQLASKQTVIVDVYDTTNHTHPIAMYGSNVSGDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLNMLVDTDLDVTQQEYVRTAQGSGKALVSIINAVLDQAKIESGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAAYVSDRVPEQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHPIEVETESTLKDTLSGFLVANGRGSWERFQAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPLEAQSKIFTPFMQVGPSISRKHGGTGIGLSISKCLVSLMNGEIGFVSKPKIGSTFTFTAVFTNACPTSSEFKSQQINNQPHPTSSEFHGMAALVIDHRPVRAKVSRYHLQRLGIHVELVSDLNQGLSTISNGNVVINMVLIEQEVWDRDSGVSSHFVNNIRKVDHGVPPKLFILVNSSSSFRASSVTSGVHDVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQSLSLHHLLLGRKILIVDDNSVNRTVAAGALKKYGADVVCVSSGKDAISLVKPPHQFDACFMDIQMPEMDGFEATHRIREIEQSVNREVSVEAFENNSKWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQLS* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03700 988 FunFam Histidine kinase 4 377 468 - -
Rops11g03700 988 Gene3D - 469 681 IPR036890 -
Rops11g03700 988 ProSiteProfiles Response regulatory domain profile. 853 985 IPR001789 GO:0000160
Rops11g03700 988 FunFam Histidine kinase 4 122 351 - -
Rops11g03700 988 SMART HisKA_10 405 470 IPR003661 GO:0000155|GO:0007165
Rops11g03700 988 SMART HKATPase_4 517 680 IPR003594 -
Rops11g03700 988 Pfam His Kinase A (phospho-acceptor) domain 405 470 IPR003661 GO:0000155|GO:0007165
Rops11g03700 988 Gene3D - 373 468 - -
Rops11g03700 988 CDD PRTases_typeI 810 881 IPR000836 -
Rops11g03700 988 Gene3D CHASE domain 122 351 IPR042240 -
Rops11g03700 988 ProSiteProfiles CHASE domain profile. 118 344 IPR006189 -
Rops11g03700 988 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 460 675 IPR036890 -
Rops11g03700 988 Pfam CHASE domain 121 317 IPR006189 -
Rops11g03700 988 CDD HATPase_EvgS-ArcB-TorS-like 522 678 - -
Rops11g03700 988 SUPERFAMILY CheY-like 704 828 IPR011006 -
Rops11g03700 988 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Rops11g03700 988 PRINTS Bacterial sensor protein C-terminal signature 623 633 IPR004358 GO:0016310|GO:0016772
Rops11g03700 988 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Rops11g03700 988 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Rops11g03700 988 Pfam Response regulator receiver domain 854 980 IPR001789 GO:0000160
Rops11g03700 988 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 390 471 IPR036097 GO:0000155|GO:0007165
Rops11g03700 988 Gene3D - 849 987 - -
Rops11g03700 988 CDD HisKA 405 466 IPR003661 GO:0000155|GO:0007165
Rops11g03700 988 CDD REC_hyHK_CKI1_RcsC-like 854 981 - -
Rops11g03700 988 ProSiteProfiles Response regulatory domain profile. 708 827 IPR001789 GO:0000160
Rops11g03700 988 ProSiteProfiles Histidine kinase domain profile. 412 680 IPR005467 -
Rops11g03700 988 SUPERFAMILY CheY-like 851 985 IPR011006 -
Rops11g03700 988 Coils Coil 382 402 - -
Rops11g03700 988 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 517 678 IPR003594 -
Rops11g03700 988 SMART CHASE_2 118 319 IPR006189 -
Rops11g03700 988 PANTHER TWO-COMPONENT HISTIDINE KINASE 83 978 - -
Rops11g03700 988 SMART REC_2 852 981 IPR001789 GO:0000160
Rops11g03700 988 Gene3D - 69 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03700 Rops-Chr11 70552616 70559359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03700 18 985 Miscellaneous Gene Families AT1G27320 70.697 0.0 1378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops11g03700 CHASE 1.3e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03700 K14489 - gmx:100776798 1659.81