Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03682 ATGGCTTCAATTCTCAAATTTCGTAGCATATTCTACACACTGGAAGCCACAAGCACACAAACATATGGTGCCCTTAGATATTTTCATTCTGGGTCTGAATGGGATTGCAGGGATTTGGATAAAAATCTAAACTTGGCATCAAAGGAGAAGCTTTGCAGGGTGGGGCTATTCTGGGACTTGGATAATAAACCACCCAACTCAATTCCACCCTATGAAGTTGCCAATAAGCTGAGAGTAGCTGCATCTTCCTTTGGTGTTGTTAGACATATGGTGGCTTATGCAAATAACCACACTTTTAGCCATGTCCCTCAAGTTGAAAGGGAGAGGAGGAAAGAGAGGAAATTGTTGAATCGTTTAGAGAATAAAGGTGTCATCAAGCCAAATGAGCCTTATCTTTGTAGGGTTTGTGGGAGAAAATTTCATACTAATGAAAAGCTTGTCAACCATTTCAAACAATTGCATGAGAGGGAGCATGTGAAAAGGATGAATCAGATAGAGTCAGCTAGGGGGAACAGGAGGGTGAAATTGGTGGCTAAGTATTCTATGAAAATTGAAAAGTATAAGAAAGCTGCAAGTGCTATTCTGACTCCCAAAATGGGGTATGGTTTGGCAGATGAGCTAAAACGTGCAGGGTTTTGGGTTAAAACTGTGTTGGATAAGCCACAAGCTGCTGATCTTGCATTGCAAAGTCACATGGTGGATATGATGGATCATAGGAGGGTTGAGTGTGTGGTCCTTGTATCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAAGCTTAGATGTCTCAAGACTGTTGTCATTGGGGATAATACTAATGATGGAGTCTTGAAGAGGACTGCTGATGCTGCCTTTTCTTGGGAGGAGATTCTGATGGGGAAGGCTAAGAAGGAGGCTGTATCAGTTGTGGAAAACTGGAAGGATCGTGATATCTTGAAAAGGTTAGAGTGGACATACAACCCAGATGTGGATAAAAAGAAATTCAATCTGGATGATACGGTTACTGAAACATCTGAAGATGATGATGTTGAAGATATATGTGATGAGGATGATGATGCCTATGAGGAAGACACAGGTTCTTGGTGGGAATTCGATTCTGATGATGATGTCACAAGTGGACAGTCAGGCAAATTATCGATCTCATCTGTGACTAGGTGA 1164 0.4132 MASILKFRSIFYTLEATSTQTYGALRYFHSGSEWDCRDLDKNLNLASKEKLCRVGLFWDLDNKPPNSIPPYEVANKLRVAASSFGVVRHMVAYANNHTFSHVPQVERERRKERKLLNRLENKGVIKPNEPYLCRVCGRKFHTNEKLVNHFKQLHEREHVKRMNQIESARGNRRVKLVAKYSMKIEKYKKAASAILTPKMGYGLADELKRAGFWVKTVLDKPQAADLALQSHMVDMMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDNTNDGVLKRTADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPDVDKKKFNLDDTVTETSEDDDVEDICDEDDDAYEEDTGSWWEFDSDDDVTSGQSGKLSISSVTR* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03682 387 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Rops11g03682 387 MobiDBLite consensus disorder prediction 367 387 - -
Rops11g03682 387 Gene3D - 45 293 - -
Rops11g03682 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 159 IPR013087 -
Rops11g03682 387 MobiDBLite consensus disorder prediction 361 387 - -
Rops11g03682 387 Coils Coil 102 122 - -
Rops11g03682 387 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 47 374 - -
Rops11g03682 387 CDD PIN_LabA-like 142 272 - -
Rops11g03682 387 Pfam NYN domain 204 285 IPR021139 GO:0004540
Rops11g03682 387 SUPERFAMILY beta-beta-alpha zinc fingers 127 157 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03682 53 377 C2H2 Transcription Factor Family AT4G12240 61.791 2.27e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops11g03682 NYN 3.1e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03682 - - lja:Lj3g3v3326020.1 599.742