Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03661 ATGGAGTTGTCTGCCTCAGGTGGCGGCGGTTCGGCACCGGCACCGGCACCGTTCCTACTGAAGACGTATGAGATGTTGGAGGATTCATCAACGAACGACATCGTATCATGGAGTGACACCAACAACAGCTTCATCGTTTGGAACCCCGCTGAATTCGGTCGTCTTCTTCTTCCCACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAATAAATCATGAGCGATGGGAGTTTGCTAATGAAGATTTTGTGAAAGATCAGAAGCATCTTCTTAAGAACATTCACCGTAGGAAACCTATCCATAGTCACAGTCATACTCCAGGCTCTATAGTGGATCCAGAAAGGTCAGCATTTGAGGAAGAAATAGAGAAACTTTCACATGAAAAAACTACTATTGAATCCAATATCATTGGCTTCGAACAACACCTGTCTGCTGCAAAGCTTCATCTTGAAGATCTACAGCAGCGATTAGATGGTATGGAGAAGAGGCAAGAAAATTTGCTCAACTTGTTCCAAAGGGCTCTTCAGAATCCTACTTTCGTTGGACAAATTTCCCGCAAGATTGAGTCCTTGAATTTATTGGGATATAACAAGAAAAGGAGATTGCCTCAGGTTGATCATTTGCAGCCTGTTGTTGAAAATGGTTTTGTTAACAATGATAGCAGTTTTGGAGTAGAATTTGGAGATATTTTCCATCAAGATTTCTCGAGTAAACTCACACTGGAATTGTCACCAGCTGTTTCAGATATCAACTTGGTATCATGTTGTACACAAAGTTCAGATGAAGATGGAGAAAACCAGCATAAGATGCTATCTGAAGGAGAACCAAAAGAAATGCAGACAAGAACAGCTCTTGGATTTACACCTGAAACATTAGAGCTTGAAGATATTGGTACATCTTTTACTCTTGAAATGGATTGTTGTTTATCAGGAAAACCAACAGCTGCTGAAAGCTCAAAACTGCAGTCCTTGGAACCAAATAGTGAAGAAGGTGATGACCACACATCCCAACTTTTAAATCTAACTCTTGCATCTTCTCCATTACAAGAGAAGAGAAATTCATACACAGATACATCACCCCAAATAGGCTATAAAGAAATTGGCATATTAACAGAATCAAGATTTTTGGCCAATGATAAAGAATTCGATGGTGGAGCTTCTTCAAACAGAAATCTAGCTAATGAGGCTACCAATTTAGCTTCCTCACATGAGGCTCCTAGTAACAACCAAGGGACCCCAGCTGTTTCAGTTGGAGTAAATGACATGTTCTGGGAACAGTTCCTTACAGAAAGACCAGGCTGTTCAGGGAATGAAGAGCCAAAATCCAACTACAAAGCAAATGCATATGGTGAGCAAGATGAAGGGCTGTCAGTTCAAGGAATCTCTGGAAACGTTATGAATATGGATCAGCTCAAACTTTGA 1452 0.4084 MELSASGGGGSAPAPAPFLLKTYEMLEDSSTNDIVSWSDTNNSFIVWNPAEFGRLLLPTYFKHNNFSSFIRQLNTYGFRKINHERWEFANEDFVKDQKHLLKNIHRRKPIHSHSHTPGSIVDPERSAFEEEIEKLSHEKTTIESNIIGFEQHLSAAKLHLEDLQQRLDGMEKRQENLLNLFQRALQNPTFVGQISRKIESLNLLGYNKKRRLPQVDHLQPVVENGFVNNDSSFGVEFGDIFHQDFSSKLTLELSPAVSDINLVSCCTQSSDEDGENQHKMLSEGEPKEMQTRTALGFTPETLELEDIGTSFTLEMDCCLSGKPTAAESSKLQSLEPNSEEGDDHTSQLLNLTLASSPLQEKRNSYTDTSPQIGYKEIGILTESRFLANDKEFDGGASSNRNLANEATNLASSHEAPSNNQGTPAVSVGVNDMFWEQFLTERPGCSGNEEPKSNYKANAYGEQDEGLSVQGISGNVMNMDQLKL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03661 483 Coils Coil 125 145 - -
Rops11g03661 483 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g03661 483 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g03661 483 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g03661 483 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g03661 483 FunFam Heat shock transcription factor 1 11 108 - -
Rops11g03661 483 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 275 IPR027725 -
Rops11g03661 483 Gene3D - 12 108 IPR036388 -
Rops11g03661 483 MobiDBLite consensus disorder prediction 272 286 - -
Rops11g03661 483 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g03661 483 SUPERFAMILY "Winged helix" DNA-binding domain 14 107 IPR036390 -
Rops11g03661 483 Coils Coil 153 187 - -
Rops11g03661 483 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Rops11g03661 483 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03661 Rops-Chr11 70148345 70151040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03661 18 483 HSF AT4G13980 50.318 1.51e-140 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Rops11g03661 HSF_DNA-bind 3.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03661 K09419 - gmx:100786408 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03661 11 70148345 70151040 Rops11g03661 11 70148345 70151040 ECH