Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03653 ATGGCATTGTGTAATAAGGTTGGAAACATCTTGAGGCAGGGCGCTGCTCAGAGCAGACAAGCACCTGTTGCTTCCATGCTTAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTTGTCGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTTAGGGATGCCTTTGCAAGCTTTGGAGATGTGACTGAGGCAAGGGTTATTACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAGTGATGACTCAGCAAGTTCTGCACAATCTGCAATGGATGGACAGGATCTAAATGGGCGAAACATTCGGGTGTCCTTTGCAAATGATAGACCTGCTGGACCTCGATCTCCTGGTGGCAGAGGTTATGGTGGTGATGGTTTTGCTTCTGGTAGGGGTGGTGGTTATTGA 423 0.4681 MALCNKVGNILRQGAAQSRQAPVASMLNYIRCMSSSKLFVGGLSYGVDDQSLRDAFASFGDVTEARVITDRDTGRSRGFGFVNFSSDDSASSAQSAMDGQDLNGRNIRVSFANDRPAGPRSPGGRGYGGDGFASGRGGGY* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03653 140 MobiDBLite consensus disorder prediction 87 140 - -
Rops11g03653 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Rops11g03653 140 MobiDBLite consensus disorder prediction 87 101 - -
Rops11g03653 140 FunFam Glycine-rich RNA-binding protein 2 25 140 - -
Rops11g03653 140 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 12 134 - -
Rops11g03653 140 SMART rrm1_1 37 110 IPR000504 GO:0003723
Rops11g03653 140 SUPERFAMILY RNA-binding domain, RBD 32 139 IPR035979 GO:0003676
Rops11g03653 140 Gene3D - 14 140 IPR012677 -
Rops11g03653 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03653 Rops-Chr11 70049672 70051287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03653 38 115 Eukaryotic Initiation Factors Gene Family AT2G23350 37.179 4.92e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03653 - - gmx:100499841 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03653 11 70049672 70051287 Rops11g03653 11 70049672 70051287 ECH