Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03638 ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTTCGCGGCCGAAAATGCATCTTCTTCTGCCAACAACAATGCTGGAACTGCAAACACTGCAGCTCCTTCTCGACCTGTTTATGTGCCTCCGCATCTGAGGAACCGTCCACCATCAGCAGAGTCACCTGCTCCTCCGATTAGTTCCGCTGCTTCTGATTCTGGTAATGCCGGATCGCGTTGGGGAGCGCCGAGGAATGATTACCATTCCGGCCCCAGCCGAACTGGTGGATGGGGGAACAGAAGTCGTGGAAGGGAGCGTGAAGTCAACCCCTTTGAAGATCAGGATGATGCAGAAGAGGCGGTTGATGAGCAGGAGAATTCAGGGATAAATTTTGATGCATATGAAGACATTCCTGTGGAGACAAGTGGTGAAAACGTGCCACCACCTGTGAACACATTTGCAGAGATTGATTTGGGTGAAGCACTTAATGAGAATATAAGGAGGTGCAAATATGTGAAGTCAACACCTGTTCAGCGACATACTATACCAATATCCCTTGCTGGAAGGGATTCGATGGCTTGTGCTCAGACTGGTTCTGGAAAGGCAGCTGCTTTCTGTTTCCCGATTATCAGTGGAATTATGAGGGGCCAACCCGTGCAAAGGCCACCTCGTGGGGTGCGTACTGTGTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCCATGCAAATACACGATGAGGCTAGGAAGTTTTCGTACCAGACAGGGGTTAGGGTGGTTGTTTGTTATGGTGGAGCTCCAATTAACCAGCAGCTACGGGATCTTGAGAGAGGGGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATTTGTTGGAGAGAGCTAGAGTTTCACTGCAGATGATCAGATATCTGGCCCTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGACATGCCTCCAGCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACATTTCCAAGAGAGATACAGAGACTAGCCTCTGATTTCCTTTCCAGTTATATTTTTTTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCACGCACAGAAGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCTCTTGAACACTGGTTGTGTCGTAACAGTTTTCCGGCAACCACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCTCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATCGGGAGGACGGGGCGAGCAGGAAAGAAGGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCTAAGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTATGCTGCTCGATCTTCCTTTGGCGGAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTGGTCGGGGTGGTTCTGATTACTATGGTGCAGGAAACAGCAGTGGTGGGTATGGGGCTTCTGGTGGGTATGCTGGAGGAGGATACGGTCCTGGGGTAACCAGTGCATGGGACTGA 1806 0.4817 MRASWADLAANFAAENASSSANNNAGTANTAAPSRPVYVPPHLRNRPPSAESPAPPISSAASDSGNAGSRWGAPRNDYHSGPSRTGGWGNRSRGREREVNPFEDQDDAEEAVDEQENSGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNENIRRCKYVKSTPVQRHTIPISLAGRDSMACAQTGSGKAAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFSYQTGVRVVVCYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPREIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLAKALADLMQEANQEVPAWLSRYAARSSFGGGRNRRSGGRFGGRDFRREGSFGRGGSDYYGAGNSSGGYGASGGYAGGGYGPGVTSAWD* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03638 601 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 108 536 - -
Rops11g03638 601 SMART ultradead3 161 373 IPR014001 -
Rops11g03638 601 MobiDBLite consensus disorder prediction 14 31 - -
Rops11g03638 601 CDD DEADc_DDX3_DDX4 143 364 IPR044763 GO:0003724|GO:0005524
Rops11g03638 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 358 IPR014001 -
Rops11g03638 601 CDD SF2_C_DEAD 370 506 - -
Rops11g03638 601 FunFam Probable ATP-dependent RNA helicase DDX4 105 360 - -
Rops11g03638 601 SMART helicmild6 416 497 IPR001650 -
Rops11g03638 601 MobiDBLite consensus disorder prediction 541 561 - -
Rops11g03638 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Rops11g03638 601 FunFam ATP-dependent RNA helicase RhlB 361 540 - -
Rops11g03638 601 Pfam Helicase conserved C-terminal domain 382 497 IPR001650 -
Rops11g03638 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 536 IPR001650 -
Rops11g03638 601 Gene3D - 97 360 IPR027417 -
Rops11g03638 601 Pfam DEAD/DEAH box helicase 166 347 IPR011545 GO:0003676|GO:0005524
Rops11g03638 601 Gene3D - 361 540 IPR027417 -
Rops11g03638 601 MobiDBLite consensus disorder prediction 40 54 - -
Rops11g03638 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 514 IPR027417 -
Rops11g03638 601 MobiDBLite consensus disorder prediction 14 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03638 Rops-Chr11 69587253 69592994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03638 140 529 Eukaryotic Initiation Factors Gene Family AT3G19760 30.964 2.61e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03638 K11594 - gmx:100795756 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03638 11 69587253 69592994 Rops11g03638 11 69587253 69592994 ECH