Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03633 ATGTCGTCAAGCGAGGTTACGCATCCTGCCTCTCAGAAGCTTCCTGAAGTAAAGATTACAAACTACTCCCTGGATTTTGATAGACAGTACCTTCCTACTCAATTTGTTCATCATCATCTAAATTTGAAGAACCCAACCATCACAATGAAGACATCTGATGGTAGAGTCTACGAATGTCCTCTGTACCACACCAGCCAGAGAAAAAATGAAGCTAGGATCTCGGCTGGTTGGAAGGCGATTTGTGATCATTTGAAGTTGAAACCAGGGGATCGTGTTTCTTTTCGACCTCTTCACCCTAGGAAAAATGTTTCATATTCAACACAGGTCATATTGAATAAGATTTTACCCTTACACTACAAGATCCTTGTTCCAAGTCTTCCTCCCAGGCCTTCTGATTTCCAGGAACTGATGGGGAAGAAAGTCAAAAAGAAGAGCCGAGGTTCTGCTAAGGAGAAGGGGGTTGCTACCCATTCGCCAAAAAAGGTTACTGAATTAAGCAACCCAACGGTTGAGTCTGTTGATGAGGGGGTTTCGGTTGCAAAGGAGACAGATTCTTGCCCTCATATTGTAAAAGGTGTTAATTTAAATAGATTGTCTGGTAAGATTGGGTCTTCTGGATCCATAAGGTGTGAAAATTGTAGGGAAGGCGCAGCTGATCGGAGGAGTAGTAAAGGAAAAGGTAAACATGGGAAGAAAAAAGGTGGTGCATCATCAGATTCAAGAGCTGAGTCAAAGTCTATATGGGTTTGTTTGGAGTGTGGTCAATATACCTGTGGAGGTGTGGGGCTACCAATAACCCCTCAATGCCATGTGGTTGGGCATGCGAGGAAAAATCGGCACCCTTTAGTGGTTCATTTTGAAAAACCTCAATTGTGTTGGTGTTTTCCTTGCAATATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAAACAAGTCATCTTCTATCTGATGTTGTGAAATTGTTGAAAGGACGATCATCAGAAAAATCATCAGTGGATAATGAGGATGTTTCCTTTGGGGATGGCAGTGTTACTTCAGAAAATAAGTCAGGAACTCCGTTCACAAGTGATTCATGCGGACAAGGTAGTTACGTAGTTAGAGGTATGGTTAATCTTGGGAATACTTGCTTCTTCAATTCAATCATGCAAAATCTGCTTGCTATGAATAGATTGCGGGACAATTTTCTAAAGTTAGATGCTCCTGTTGGGCCACTGATTAGTTCCTTGAAGAAGCTGTTTACTGAAGCAAACCCAGAATCAGGATTGAAAAGCACTATAAATCCTAGATCCTTTTTTGGTTCTTTATGTTCGAAGTCTCCCCAATTTCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGTTGTTTACTGGATGGGTTGAGCACTGAAGAACTGGCTGGAAGGAAACAGAATGGTTCTCCCAGGAAAGATGGGACCACTTCCAATAGTTTAGTTGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTATGTTGCATTGAATGTGGGCATTTTTCAACAGTGTGTGAGCCATTTTTAGATCTTTCCCTTCCTGTTCCAACTAAGAAACCCCCACCTCGGAAGGCACAAGTACCTCGAACCAAAAAAGCAAAACTTCCACCAAAAAAAGGTGGAAAGACTCGAGTCAAAGTTAGCAGGGATGCTGATCCCTTACCTGTTCAAAGTCTATCAAACCAATTATCCAGCCATCTATCATCCTGCCCTGATCAGTCCACCATATCAGTTGCTGGAGAAATGGTGGCTTCTTCTGGTGATTCTACAATATTAGGTTCTGAAGAAATAAGCAGTGTGGCTAATAAAGAGTCTACACCTAATTTGGTTACTGTTGGAGAGTCTCAACATATGCAAGTGCTTGACAGTGGTGCAGAGAAAATGTCAGCTTCATCAGATGATTTTGCATGGTTGGATTATGTGGAAGCTGGAACCATGATAGATGAATGTGCTTTCATTTCCCAGAGGGAGGATGCACCAAAGGTACAGGATACTGAGAGCAAGGATGAATGTTTAGATGAATTCTCTGAACAGGCTAGCTGTGAAACTAGTGGTCCTGTTTGTCTCCTTAAGGAGGATCAAAACCTAGGACCAGATTCTTCTTCAGGGAATGGGTGGGAAGATGAGGTTCCATTACAAGTTCAAGGTTCAGAGGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCAGCTGGTGAGATTGTTGGAAGAGATAGCGAGGCCTCCTCATCAGTTGTGGGTAGTGGTCAAGAAAAATTGGAGTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAGGTTTTTGCTGGGCCTGCTCCTAGACCTTCTTCATGTAGTGACATGGAAGCTGGTTTTATCACTGGAAACAACAGTGAGTCTGATCCAGATGAAGTAGATGATACATATTCTCCAGTCTCTGTAGAGAGTTGCTTGGCACATTTTGTAAAACCTGAGCTTCTCTCAGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAGTTCTCCAACGACAAAAGATGGAAACAGAAGAGCAGGCAAGAACTGTATCCGATGGAAATGAGACTGGTAGTCATGATGAACTGTCACATTCATCTAACGCTTGTTCTGTTAAAGTCAGAAGCACTGGAAATGGGGATATTAAAAATGACAAAAATATAGAAAATTCGGTTTCACATGTCAAACATGGCACAGAGCTTGAAAACGGTCAACCAGATGAGCTGAGTTCAATTGTTAATCAAAGGGACCCTGTGGCATTTAAGATGGAAGATACACATAATGACGAATTACAGTCTTCACGTTTTCATAAAGTTTACGATGAAGGAAGCTGCAGTCATTCAGCTTCTAATTCTTGTGTTACCGAAAATGTCCAAAGAAGAGATCCTCCAATTTTAGGTAATGATAATAATGACTCAAAAGAATGCAGCAAGAAACAGACCCACTCCAAAAGTGTGATGGTGAAGAGGGATGCAACTAAGAGGGTCCTCATTTACAAAGCTCCGCCTGTCTTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCCCGTGGTCGCTTAAGTAAATTAAATGGTCATGTCAATTTCAGAGAAACATTGGATCTTAGACCATATATGGACCCCAGGTGCGTGAATGAAGAGAAGTATGAATACCACTTGGTTGGTGTAGTGGAGCACTCGGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGCCAGAGGAACAGAGGGAAGGCTGATACAGAGCATGAGGGTTCCACTTGGTATCAGGCGAGTGATGCATATGTGCGTGAAGTTTCCCTTGACGAAGTTCTTCGCTGTGAGGCATACATTTTATTCTATGAAAAAAATTGA 3378 0.4201 MSSSEVTHPASQKLPEVKITNYSLDFDRQYLPTQFVHHHLNLKNPTITMKTSDGRVYECPLYHTSQRKNEARISAGWKAICDHLKLKPGDRVSFRPLHPRKNVSYSTQVILNKILPLHYKILVPSLPPRPSDFQELMGKKVKKKSRGSAKEKGVATHSPKKVTELSNPTVESVDEGVSVAKETDSCPHIVKGVNLNRLSGKIGSSGSIRCENCREGAADRRSSKGKGKHGKKKGGASSDSRAESKSIWVCLECGQYTCGGVGLPITPQCHVVGHARKNRHPLVVHFEKPQLCWCFPCNMLIQVDKIEKTDETSHLLSDVVKLLKGRSSEKSSVDNEDVSFGDGSVTSENKSGTPFTSDSCGQGSYVVRGMVNLGNTCFFNSIMQNLLAMNRLRDNFLKLDAPVGPLISSLKKLFTEANPESGLKSTINPRSFFGSLCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSPRKDGTTSNSLVDALFGGQISSTVCCIECGHFSTVCEPFLDLSLPVPTKKPPPRKAQVPRTKKAKLPPKKGGKTRVKVSRDADPLPVQSLSNQLSSHLSSCPDQSTISVAGEMVASSGDSTILGSEEISSVANKESTPNLVTVGESQHMQVLDSGAEKMSASSDDFAWLDYVEAGTMIDECAFISQREDAPKVQDTESKDECLDEFSEQASCETSGPVCLLKEDQNLGPDSSSGNGWEDEVPLQVQGSEVLLLPYKEESSSAGEIVGRDSEASSSVVGSGQEKLEFDGFGDLFNEPEVFAGPAPRPSSCSDMEAGFITGNNSESDPDEVDDTYSPVSVESCLAHFVKPELLSDENAWHCENCSKVLQRQKMETEEQARTVSDGNETGSHDELSHSSNACSVKVRSTGNGDIKNDKNIENSVSHVKHGTELENGQPDELSSIVNQRDPVAFKMEDTHNDELQSSRFHKVYDEGSCSHSASNSCVTENVQRRDPPILGNDNNDSKECSKKQTHSKSVMVKRDATKRVLIYKAPPVFLTIHLKRFSQDARGRLSKLNGHVNFRETLDLRPYMDPRCVNEEKYEYHLVGVVEHSGTMRGGHYVAYVRGGQRNRGKADTEHEGSTWYQASDAYVREVSLDEVLRCEAYILFYEKN* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03633 1125 MobiDBLite consensus disorder prediction 844 894 - -
Rops11g03633 1125 Pfam Zn-finger in ubiquitin-hydrolases and other protein 210 303 IPR001607 GO:0008270
Rops11g03633 1125 SUPERFAMILY Cysteine proteinases 367 1124 IPR038765 -
Rops11g03633 1125 SMART Zf_UBP_1 238 291 IPR001607 GO:0008270
Rops11g03633 1125 Gene3D - 4 110 IPR015300 -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 844 864 - -
Rops11g03633 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 320 IPR013083 -
Rops11g03633 1125 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 368 1125 IPR028889 -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 219 239 - -
Rops11g03633 1125 FunFam Ubiquitinyl hydrolase 1 181 324 - -
Rops11g03633 1125 ProSiteProfiles B3 DNA-binding domain profile. 14 113 IPR003340 GO:0003677
Rops11g03633 1125 SUPERFAMILY RING/U-box 185 302 - -
Rops11g03633 1125 SUPERFAMILY DNA-binding pseudobarrel domain 18 97 IPR015300 -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 137 169 - -
Rops11g03633 1125 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 177 1124 - -
Rops11g03633 1125 CDD B3_DNA 27 95 IPR003340 GO:0003677
Rops11g03633 1125 Gene3D Cysteine proteinases 910 1125 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 976 991 - -
Rops11g03633 1125 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1056 1073 IPR018200 GO:0004843|GO:0006511
Rops11g03633 1125 FunFam Ubiquitinyl hydrolase 1 883 1125 - -
Rops11g03633 1125 Pfam B3 DNA binding domain 18 98 IPR003340 GO:0003677
Rops11g03633 1125 MobiDBLite consensus disorder prediction 530 548 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 137 158 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 865 882 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 951 991 - -
Rops11g03633 1125 Gene3D Cysteine proteinases 357 577 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 337 353 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 331 353 - -
Rops11g03633 1125 MobiDBLite consensus disorder prediction 519 554 - -
Rops11g03633 1125 Gene3D Cysteine proteinases 781 856 - -
Rops11g03633 1125 ProSiteProfiles Zinc finger UBP-type profile. 184 320 IPR001607 GO:0008270
Rops11g03633 1125 Pfam Ubiquitin carboxyl-terminal hydrolase 369 1122 IPR001394 GO:0004843|GO:0016579
Rops11g03633 1125 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 369 384 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03633 Rops-Chr11 69506018 69514359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03633 996 1124 Miscellaneous Gene Families AT2G24640 37.121 1.53e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops11g03633 UCH 1.9e-47 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03633 K11844 - gmx:100780952 1569.29