Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03630 ATGAGAGGAAGAAGTTACAGTCCATCACCTCCACCACCACCAGGAAGAGGTTACAGCAGCAGAAGAGGGAGAAGTCCTAGCCCTAGAGGTCGCTATGCCCCTCGTCCCAGAGATCTCCCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGATTGTAGACCTGAGGATCTTCGTAGACCTTTTGGTCAATTTGGTCCTCTTAAGGACATTTACCTACCTAAAGATTATTACACTGGAGAGCCCCGTGGTTTTGGTTTTGTCCAATTTGTTGATCCTGCTGATGCTGCTGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTCGGGAGTTGACTGTTGTCTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGGGAAGAGAGAGAAGGGGTCGTCCTTCTGATCGAAGGAGATCTCCTCCTCGTTATTCTCGTTCGCCCCGCTACTCCAGATCTCCACCACCGCGTCATAGATCTCGCTCTCGCAGTCATGACTATTATTCTCCTCCTCCTAAGAGAAGGGAATATTCAAGATCTGTGTCACCTGAGGAGAGAAGGCATAGTCGAGAAAGGTCGTATTCACATCATAGCAGAGAGAGGTCATACTCACGCTCTCCACCCTATAATGGGGGCTCAAGAAGCCGTAGTCAGAGTCCAGCAAAGGGCCCAGGCCGGAGCAGAAGCCCAAGTCCAAACCGTGGTGATGTTAGGGAATCAGCCCGTGTCTGA 738 0.4946 MRGRSYSPSPPPPPGRGYSSRRGRSPSPRGRYAPRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGEPRGFGFVQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRGRERRGRPSDRRRSPPRYSRSPRYSRSPPPRHRSRSRSHDYYSPPPKRREYSRSVSPEERRHSRERSYSHHSRERSYSRSPPYNGGSRSRSQSPAKGPGRSRSPSPNRGDVRESARV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03630 245 Gene3D - 35 150 IPR012677 -
Rops11g03630 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 112 IPR000504 GO:0003723
Rops11g03630 245 MobiDBLite consensus disorder prediction 1 17 - -
Rops11g03630 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Rops11g03630 245 SMART rrm1_1 42 115 IPR000504 GO:0003723
Rops11g03630 245 MobiDBLite consensus disorder prediction 119 245 - -
Rops11g03630 245 MobiDBLite consensus disorder prediction 162 205 - -
Rops11g03630 245 SUPERFAMILY RNA-binding domain, RBD 40 147 IPR035979 GO:0003676
Rops11g03630 245 MobiDBLite consensus disorder prediction 119 145 - -
Rops11g03630 245 MobiDBLite consensus disorder prediction 206 228 - -
Rops11g03630 245 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 40 235 - -
Rops11g03630 245 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03630 Rops-Chr11 69442071 69444818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03630 41 172 Eukaryotic Initiation Factors Gene Family AT4G34110 27.273 1.09e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03630 K12900 - gmx:100775883 290.812