Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03629 ATGAGGAACCCATCATCAACAAACAAGAACAAAACTACTGGTAATGGCAATACTCCATGCTGCAGCAAGATTGGGTTGAAGAGAGGACCATGGACTCCAGAAGAAGACGAGGTCTTAGCTGAATACATCAAGAAAGAAGGAGAAGGCCGTTGGAGAACACTTCCCAAAAGAGCTGGTCTCCTCCGCTGTGGCAAGAGTTGTCGCCTCCGCTGGATGAACTATCTCCGCCCATCTGTCAAGCGCGGACAGATCGCCCCTGATGAGGAAGATCTCATCCTCCGCCTCCACCGTCTCCTTGGCAACCGGTGGTCTTTGATAGCTGGGAGAATCCCAGGAAGAACAGATAATGAGATCAAGAATTACTGGAACACCCATCTCAGCAAGAAACTCATCAGCCAAGGGATTGATCCTAGAACTCACAAGCCTCTCAACCCACCACCAGCACCATCTATTCCTTCTTCTTCTTCAACCAAACCTCCTCCAATAATCCTCAATCACCAAACCCAACAATTTCATCCCAAGAGCACTTTCCCTGATAATTTGGATCAATATCAGCAAGCTCAAGCAGCAGCTCAGAATATTGAGAATATTAATCCTGCACCTGCTGCTGCCACAGATGATGTTTCTGCAGTGGATCATCTACTTGCCACCAGTAACAACCAGGATTATGATGATATCAATTATTGTTCTGATGATGTCTTTTCTTCCTTCCTCAATTCTTTGATCAACGAGGATGCTTTTGCTGCTCAGCGCCACCTGCAATCAGAGCCTCCTAATGGCCATGACATTGCACTGCCTTCTGATGATCCTTTGATTTCAATCACCACCACTGCATCTGCAACGCAACCTTATAGCCTTGGTGTTGTCTGGGAATCTCCATTCATCTCTGCTACTTTCACCCAAAACGACCCCAACCACTCCAAGAAGGTTGTTGATCACCCAGAATAG 948 0.4684 MRNPSSTNKNKTTGNGNTPCCSKIGLKRGPWTPEEDEVLAEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPPAPSIPSSSSTKPPPIILNHQTQQFHPKSTFPDNLDQYQQAQAAAQNIENINPAPAAATDDVSAVDHLLATSNNQDYDDINYCSDDVFSSFLNSLINEDAFAAQRHLQSEPPNGHDIALPSDDPLISITTTASATQPYSLGVVWESPFISATFTQNDPNHSKKVVDHPE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03629 315 MobiDBLite consensus disorder prediction 1 20 - -
Rops11g03629 315 FunFam transcription repressor MYB5-like 85 151 - -
Rops11g03629 315 MobiDBLite consensus disorder prediction 135 164 - -
Rops11g03629 315 Gene3D - 85 145 - -
Rops11g03629 315 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Rops11g03629 315 CDD SANT 86 126 IPR001005 -
Rops11g03629 315 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Rops11g03629 315 Pfam Myb-like DNA-binding domain 85 126 IPR001005 -
Rops11g03629 315 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 16 209 - -
Rops11g03629 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Rops11g03629 315 MobiDBLite consensus disorder prediction 1 26 - -
Rops11g03629 315 CDD SANT 30 75 IPR001005 -
Rops11g03629 315 MobiDBLite consensus disorder prediction 140 156 - -
Rops11g03629 315 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Rops11g03629 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Rops11g03629 315 FunFam Myb transcription factor 25 81 - -
Rops11g03629 315 Gene3D - 25 81 - -
Rops11g03629 315 SMART sant 80 128 IPR001005 -
Rops11g03629 315 SMART sant 27 77 IPR001005 -
Rops11g03629 315 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03629 Rops-Chr11 69427880 69440491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03629 18 244 MYB Transcription Factor Family AT3G13540 58.150 1.70e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g03629 Myb_DNA-binding 9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03629 K09422 - gmx:100782308 363.229