Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03625 ATGTGGGTTTTGGAACAGGAAAGGGCTAAAAGGTCAGTAGAAGCCATGGATGGAGATTGAATCAAGCATTTGGAGGGCACATTCATAAAACTGAACAACATTATGGAGGAAGCAATGGCAGCAAGATATTGGTGTCATATGTGCTCTCAAATGGTCAATCCCATCATGGAAGTGGAGATCAAATGCCCATTTTGCCAAAGTGGATTTGTTGAAGAAATGAGTAACACCAGCAGTAGCATAGACCTTCACAATACGCCAGAAGCTGATATCGGATCCGATCGGGCTCTCTCCCTTTGGGCGCCAATCTTACTAGGCATGATGGGCAATCCACGTCATCGTCGAAGACTCAGACGAACAGAGCTTGATGATGATGACTATGATAATGCTAATCGTGATGATGTTGATGGTGGAGAAACTGAATATGATAGAGAGCTTGAGTCCATCCTTCGCAGGAGAAGGAGAAGCTCAGCTACCATCCAACAATTGCTTCAAGGCATAAGAGCTGGACTGACATCTGAATCCGACAGTGATGACCATGCCAGGGAAAGGGAAAGGGAAAGGGAAAGAGAGCGTGTCATCTTGATCAATCCTTTTAACCAGACTATTATTGTTCAAGGTTCCTATGATTCAAACCGGGATCAAAGTGATAATCATAGCTCCATTGGGTCTCTAGGTGACTATTTCATGGGGCCTGGTTTGGATTTATTGTTGCAACACTTGGCTGAGAATGACCCCAATAGGTATGGAACTCCACCTGCACAGAAGGAGGCCATTGAAGCTCTGCCTACTGTGACAATTGATAAGAATTTGCAGTGTTCTGTATGTTTGGAAGATTTTGAAATGGGTTCTGAGGCTAAAGAAATGCCTTGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCATGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTTTCAATTGCCGGTTGATGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCAGAAATCAAAGGGAGGATGAAAGTATTGGACATGACAATGCTGAAGGAGATAGTGAAGGGAGAAATGCTAGTGGGGGTAGAAGATTCTCGTTTCCATGGCCTTTTAATGGATTATTTTCTTCATTAAACTCTTCATCATCTTCAAGCCCCAATTCAAATGGAAATGGTACTCAATCAGAAGATGATTGA 1182 0.4306 MWVLEQERAKRSVEAMDGD*IKHLEGTFIKLNNIMEEAMAARYWCHMCSQMVNPIMEVEIKCPFCQSGFVEEMSNTSSSIDLHNTPEADIGSDRALSLWAPILLGMMGNPRHRRRLRRTELDDDDYDNANRDDVDGGETEYDRELESILRRRRRSSATIQQLLQGIRAGLTSESDSDDHARERERERERERVILINPFNQTIIVQGSYDSNRDQSDNHSSIGSLGDYFMGPGLDLLLQHLAENDPNRYGTPPAQKEAIEALPTVTIDKNLQCSVCLEDFEMGSEAKEMPCKHRFHSACILPWLELHSSCPVCRFQLPVDESKQDSDVSRNSRNQREDESIGHDNAEGDSEGRNASGGRRFSFPWPFNGLFSSLNSSSSSSPNSNGNGTQSEDD* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03625 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 318 IPR013083 -
Rops11g03625 392 MobiDBLite consensus disorder prediction 122 141 - -
Rops11g03625 392 Pfam Ring finger domain 270 312 IPR001841 -
Rops11g03625 392 Pfam zinc-ribbon 41 72 IPR039525 GO:0061630
Rops11g03625 392 MobiDBLite consensus disorder prediction 319 352 - -
Rops11g03625 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 173 316 - -
Rops11g03625 392 ProSiteProfiles Zinc finger RING-type profile. 271 312 IPR001841 -
Rops11g03625 392 MobiDBLite consensus disorder prediction 164 187 - -
Rops11g03625 392 CDD RING-H2_RNF181 270 315 - -
Rops11g03625 392 SMART ring_2 271 311 IPR001841 -
Rops11g03625 392 MobiDBLite consensus disorder prediction 372 392 - -
Rops11g03625 392 SUPERFAMILY RING/U-box 261 321 - -
Rops11g03625 392 MobiDBLite consensus disorder prediction 319 358 - -
Rops11g03625 392 MobiDBLite consensus disorder prediction 171 187 - -
Rops11g03625 392 FunFam E3 ubiquitin-protein ligase RING1-like 238 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03625 Rops-Chr11 69336806 69340333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03625 137 318 C3H Transcription Factor Family AT1G26800 38.172 1.00e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03625 - K11982 gmx:100784876 484.952