Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03612 ATGTCGGTTTCAGAGAACAAGTCTCACGTTGTTGTTGTCGTTGTCAACAATGACAATGGTTGTCCCCGGAGCTTGGTCGGCGGTGAAGGGTGTTCTGAGACCAAAGAGATATCAGATTTGGAGCAAAAGTGTTCCCAGGAGTTTGGTTCCGAGATTGTGGGAGTGTCCGAAAAAGAGAAGGGATCCTGTGTGTCTGAGTGTTGTGTTGAGGTGGATCTGGACAATGGGGTGTCTGATGTTAAGGTACATTTGGCTAAGGTGGAGAGGGATTGCAGGATTTGCCATCTCAGCATGGATATGACTTGTCATGACCATGAATCTGGGACTCCCATTGAGTTGGGGTGTTCTTGCAAAGATGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCACACAATGTAGCTGGTGTAGTTGAAGTTGAAATGACAGAACAATTGAATGAAGCAAATGATGCCTCCATGGTACCACCAACTGGACCTGCCCCTCCTGCAGAAACTCGAAATTTCTGGCAGGGTCACCGGTTCTTGAATTCCCTTCTTGCATGTATGGTCTTTGCCTTTGTCATATCATGGCTTTTTCACTTCAACGTGCCCTCATGA 651 0.4654 MSVSENKSHVVVVVVNNDNGCPRSLVGGEGCSETKEISDLEQKCSQEFGSEIVGVSEKEKGSCVSECCVEVDLDNGVSDVKVHLAKVERDCRICHLSMDMTCHDHESGTPIELGCSCKDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGVVEVEMTEQLNEANDASMVPPTGPAPPAETRNFWQGHRFLNSLLACMVFAFVISWLFHFNVPS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03612 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 152 IPR013083 -
Rops11g03612 216 SUPERFAMILY RING/U-box 88 147 - -
Rops11g03612 216 PANTHER ZINC FINGER, RING-CH-TYPE 38 215 - -
Rops11g03612 216 ProSiteProfiles Zinc finger RING-CH-type profile. 83 151 IPR011016 GO:0008270
Rops11g03612 216 SMART ringv_2 90 145 IPR011016 GO:0008270
Rops11g03612 216 Pfam RING-variant domain 91 144 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03612 Rops-Chr11 69174659 69177639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03612 7 216 C3H Transcription Factor Family AT5G05830 55.924 3.44e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03612 - - gmx:100818979 313.153