Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03576 ATGGCTCCTCCTTCAGATATCAATCATCTTTCTCACCCTTGCATATATGGGGACTTTGTTTCTTCATACTCAGAGAGAAAGTCTGGTTTTATGAAATTGTTTGGTAAGATTTTCAAAAGTGGGTCCAATAGAGGAAGAGGTGGTGGTAGTCATCTACAGCAGCCTGTGGAGGAAAACATGGTTTGGCGAGCTCCAGCTAGATCATTGGATGACCGTGGTAGACCTCAAAAGGAGGAAGAGGATCTGAACCATGCAATTGCACTTTCTTTAAGCGAAGGTTTAAAGAGACCAACTGGATATAGATGGCGGACAGGAATTGATGAAGATTACGCAAAGCCATTTCAGGATCGTATGCACTCATCTGCACACCCTCCATATGCCCCTTTACCTTTTTATCCCCGAGGATATAGCATGCCATCAAATATCAGAATATGTGGAGGGTGCAACAAGGAGATACTCTACGGCAATTGTTTAGGATTTGAGCATAGTTATTTCCATCCAGACTGCTTTAAATGTCACTCTTGCCATTACCCCATTACTGAGCGTGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTCAGAGAATTGACCCACCCTAAATGTGAAGTTTGCCATCAATATATACCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGTCTCGTGGTGAAAGATACTACAGATTAGAAGATGGACGAATTTTGTGCTTTGAGTGCATAGAATCTGCTATAACGGATACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTATGAAGGAATGAATATGAGAATAGATCAACAAATCCCCATGCTTCTTGTTGGGAGAGAAGCACTTAATGAAGCTATTGTTGGGGAGAAGCATGGTTTCCATCACTTGCCAGAAACAAGGGGTTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTGTACATAGATGGCCAAAATTTGGAGGCCATCGGTTAATAGGGATGAGAACTCAACCACAAAAGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCAAGGTTACTCACAGGTGCTATCCTTGCTCATGAGTTGATGCATGCTTGGTTACGCCTTAAAGGTTACCGCAACCTTGATCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCTTATATGTGGCTTGATACAGAAGTGATGTCAGGTTCTAGAACCATGCCATCAACATCGGCAGCATCTTCCTCCTCCTCCTCCTCATACTCATCAAAGAAAGGTGTGAGATCTAAAGTTGAGAATAAATTGGGTGAATTTTTCATGAACCAGATTGTCAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGAGCAGCTAATGCAGCTGTTAATAAATATGGTTTACGTTGTACTTTGGAGCATATTCGTTTGACTGGTCAGTTTCCACTGTAA 1530 0.417 MAPPSDINHLSHPCIYGDFVSSYSERKSGFMKLFGKIFKSGSNRGRGGGSHLQQPVEENMVWRAPARSLDDRGRPQKEEEDLNHAIALSLSEGLKRPTGYRWRTGIDEDYAKPFQDRMHSSAHPPYAPLPFYPRGYSMPSNIRICGGCNKEILYGNCLGFEHSYFHPDCFKCHSCHYPITEREFSLSGKHPYHKSCFRELTHPKCEVCHQYIPINAAGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYYRLEDGRILCFECIESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKHGFHHLPETRGLCLSEEQTVTSVHRWPKFGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLDPEVEEGICQVLSYMWLDTEVMSGSRTMPSTSAASSSSSSSYSSKKGVRSKVENKLGEFFMNQIVNDSSPAYGGGFRAANAAVNKYGLRCTLEHIRLTGQFPL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03576 509 PANTHER PROTEIN DA1-RELATED 2 35 508 IPR045218 -
Rops11g03576 509 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Rops11g03576 509 Pfam LIM domain 145 198 IPR001781 -
Rops11g03576 509 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Rops11g03576 509 MobiDBLite consensus disorder prediction 433 452 - -
Rops11g03576 509 MobiDBLite consensus disorder prediction 43 79 - -
Rops11g03576 509 Pfam Protein DA1 294 504 IPR022087 -
Rops11g03576 509 MobiDBLite consensus disorder prediction 64 79 - -
Rops11g03576 509 CDD LIM_DA1 145 197 - -
Rops11g03576 509 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Rops11g03576 509 Gene3D Cysteine Rich Protein 140 214 - -
Rops11g03576 509 SMART lim_4 144 196 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03576 Rops-Chr11 68249776 68255184 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops11g03576 DA1-like 5.4e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03576 - - gmx:100798829 938.332