Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03567 ATGGAAGAACAGAAGGGGGAATCGTTCGAAGGGTGGTCATGGTCGCGTTCAATAAGCGAAACGGTAAATGGGTCTCACGAATTAACGATAAAGGGTTATTCTTTGGCAAAAGGAATGGGTGCCGGAAAATACATCACTAGCGACACCTTCAACGTTGGTGGTTACGATTGGGCAATTTACTTCTACCCTGATGGGAAGAACCCTGAAGATAATTCCATGTATGTTTCAGTGTTCATCGCACTCGCTAGTGATGGCACTGATGTTAGGGCGTTGTTCAAATTAACGTTGCTCGATCAAACCCCAAAGGGAAATCACAAAGTTCATAGCCACTTCGATCGACCCCTTGAAAGTGGTCCTTATACTTTGAAGTACAGAGGCAGCATGTGGGGTTACAAGCGTTTTTTTAAAAGGACGTTGTTGGAAAATTCTGAGTATTTGAAGGATGATTGTCTTGTTATGCATTGCACTGTTGGTGTTGTGAAGACTCGTTTTGAGGGATCCAAAGAGGGTATTGTTGTGCTGCCATCCAACATGGGACGAGATTTTAAGGACTTGTTTGATTCTCAAGTTGGTTGTGACATTGTTTTCAAGGTTAAGAGTGAAAGCTTCAAGGCTCATAAGTTGATTCTTGCTGCAAGGTCCCCTGTTTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCCAGCATAGAGGAAGTGGTGGTAGAAGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTTTTCATTTACTCAGACAAACTTCCTGACATATATGAGGTTATGGGCTCCATACCTATGTGCTCATATACTGTCATGGTGCAGCATCTTTTGGCTGCTGCTGATCTCTATAACATTGATAGGCTAAAACTGTTGTGCGAATCAAAATTGTGTGAAGAAATCAATACTGACAATGTGGCGACAACACTTGCCCTGGCTGAGCAACACCACTGTCCACTGCTTAAGGCAATCTGTTTAAAATTTATTGCAAATCCACCAAACTTGGGAGCTGTAATGCAGTCCGAATCTTTTGCGCATTTGAAAGAGAGCTGCCCCTCAATGTTGTTGGAGTTGCTGGAGACATTTGCATCAGTGGATGATAATTCAGGCCAGACATTGAGCAGGAAGAGAAGTGTCAGCAGTGTATATGGACAAGATTTAGCAGATGGTGCAGCTGCTGAATCAGTTAATCCAAATGGCAGGCGGATCAGGAGGCGGACATAA 1224 0.433 MEEQKGESFEGWSWSRSISETVNGSHELTIKGYSLAKGMGAGKYITSDTFNVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASDGTDVRALFKLTLLDQTPKGNHKVHSHFDRPLESGPYTLKYRGSMWGYKRFFKRTLLENSEYLKDDCLVMHCTVGVVKTRFEGSKEGIVVLPSNMGRDFKDLFDSQVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSIEEVVVEDIEPFIFKAMLLFIYSDKLPDIYEVMGSIPMCSYTVMVQHLLAAADLYNIDRLKLLCESKLCEEINTDNVATTLALAEQHHCPLLKAICLKFIANPPNLGAVMQSESFAHLKESCPSMLLELLETFASVDDNSGQTLSRKRSVSSVYGQDLADGAAAESVNPNGRRIRRRT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03567 407 ProSiteProfiles MATH/TRAF domain profile. 23 157 IPR002083 GO:0005515
Rops11g03567 407 SUPERFAMILY POZ domain 174 299 IPR011333 -
Rops11g03567 407 ProSiteProfiles BTB domain profile. 192 255 IPR000210 GO:0005515
Rops11g03567 407 Gene3D - 300 381 - -
Rops11g03567 407 SMART math_3 28 140 IPR002083 GO:0005515
Rops11g03567 407 Pfam BTB/POZ domain 182 299 IPR000210 GO:0005515
Rops11g03567 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 357 IPR045005 GO:0016567
Rops11g03567 407 FunFam BTB-POZ and math domain 1 169 295 - -
Rops11g03567 407 CDD MATH 24 157 IPR002083 GO:0005515
Rops11g03567 407 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 22 162 IPR008974 GO:0005515
Rops11g03567 407 CDD BTB_POZ_BPM_plant 178 298 - -
Rops11g03567 407 CDD BACK_AtBPM-like 298 361 IPR034090 -
Rops11g03567 407 SMART BTB_4 192 301 IPR000210 GO:0005515
Rops11g03567 407 Gene3D Potassium Channel Kv1.1; Chain A 168 296 IPR011333 -
Rops11g03567 407 SUPERFAMILY TRAF domain-like 20 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03567 Rops-Chr11 68090456 68096102 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops11g03567 BTB 1.6e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03567 K10523 - gmx:100778300 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03605 8 76140977 76145488 Rops11g03567 11 68090456 68096102 ECH
Rops11g03567 11 68090456 68096102 Rops11g03567 11 68090456 68096102 ECH